Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00888 ATGGGAAAGAAAAACAAATTGAAGGAGAATGGTGGCAAAGAACACTGCCCCTTAACAATTTTTGTCTCCAATTTGCCCTACTCTTTTTCCAACTCTCAGCTTGAGGAGACATTCAGTGAGGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAGAAGGGGTCTGCCCAACATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAGGAAGACGCTAATCGTGCTATTGAGCAAAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGTAGTGAAGCAAGCAATGCCCCGTCCTCCTCGTGATGAAAGACAATCAAAACCAAATCAAGTGGGCAAGACAGATGATCTCATGAAGTCAGAAAATGATAAGGATGACAGATTATCTGGAGTAGAGAAGCCAGTTTCAGTTTTGAAGGAAGAAGAAGTACTAGTTCCAAATAAACAAAAAAACTCAAGGAAGCCCTTAGAAATGAAAAAAGCAACTCTTTGTAATGATGTGGCTGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTTGTGAATTCTGATATGGCCGAAGATGTTCACCGTCAAGCCAGAGAGATCGGCACTGTGTGTTCTATTAAGTACCCCCTTTCGAGGAAAGATCTTGAGCAAAATGGACTCCTGCAGGATGGCTGTACTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAGTCAGCTCGAGCTTCTGTAGCAGTGTTACATAAAAAAGAGATAGGAGGAGGAATTGTTTGGGCCCGTCAACTGGGTGGAGAGGGCTCCAAGACTCAAAAATGGAAGCTTATTGTCAGAAATCTTCCCTTCAAGGCCAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAAATCAGACACAGGTCTGTCTAAGGGTTTTGCGTTTGTAAAATTCACCTGCAAGCTAGATGCAGAAAATGCCATTCAAAAGCTCAATGGATCAAAGTTTGAGAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTCAGTAGTGATAAAAATGATGCTCTTGATTCAGAGACAGGGCAACAAAAGTTGAGAGATGATGATAGTAGAGCTACTGAGGACGATGTTGAGCATATTGACAAACAATCTTATGATGGAGATGATAGTAATGTAGATTACTCTAGTGCCATTGAGGAAGAAGGCAGTCCTTCTGAAGATAATTTTGAAAAGGAAGCAGACATCGCAAGAAAGGTCCTGAACAACTTGATTACATCTTCCACAAAAGGAGCATCTGTAAATAATGATTCTATGTGTTCCAAAGAAAATAAGGAGCCAAAATCCAATGAAATTGTTAAAGATGCAGATAGTAAAGCATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTGAGCCTGAAATTTCCGGCAGAAGCAAGTTATCAAATAAACAAACAGAAGAAGATGATTTGCAAAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTCAAACAACGATTTTCTGGATTTGGGGACGTAGAATACTTTCTTCCTGTTCTCCACCAAGTGACCAAGCGACCAAGAGGGACTGGTTTTCTTAAGTTCAAAACCGTAGAAGCTGCTGAAACTGCAATTTCAACGGCTAGTGCTGCTTCTGGGATGGGTATTTTACTGAAGGGTAGACCATTAAAAGTTTTAAAGGCTTTGGACAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGTAATATTTACTTGACAAAGGAAGGACTTATCCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAACCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACATACCAAAGTCCATGACTGAAAAAGAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAGATGGAAAGAAAGGAAAGGTTTCTCAAGAACACCATTCACGTGGAGTTGCCTTTATTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAACCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTAAAACTTCGGAAGGCAAAGCTCCAATCTCAGCAGCAGGGTCCTCATGATGACATTGCCAAGGAAAATGACAAACCTGTCATAGCAGAAGTTCAGACACATGTAAAGGACAGAAAACAAAAACGAAAATCTCAAGAGCATGATAATTCAGTAAAGGACTCGGTACTGAATACAAATGGTGAATTAGGTAGTCAAATGGCAAATGGAAAATCCCCTCAAGGACGCAAATACAAAAGACAGAAAGGCAACAATCAGAGTGCAAATGCTGAATCACTAAAAGAAAATGCAAAAGCCTTGTCCAAGAAGTCAAAGAATAACCGAGATGGCCAGAATCATGGTGATGCATCTCTTGAAGGTCAAAACACTGGCATTGTCATTAGTGGAACAAAATCGGGAAACAAAGATAATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGAACAAGCAGGCCAAAAGGTTTCTAAGAAACGACCAAAGAAGAATAAAGATTCAGCAGGGAAGGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGATTCCCAAGGGAATGATGGTGAGAAAAAAGCTTCTAAACAACTTAGAAAATGGTTCCAATCATAG 2892 0.4001 MGKKNKLKENGGKEHCPLTIFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIEQKNGSSVGGRKIVVKQAMPRPPRDERQSKPNQVGKTDDLMKSENDKDDRLSGVEKPVSVLKEEEVLVPNKQKNSRKPLEMKKATLCNDVADEGGCSEKQRVARTVIFGGLVNSDMAEDVHRQAREIGTVCSIKYPLSRKDLEQNGLLQDGCTLDASAVLYTSVKSARASVAVLHKKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEIRDMFSSAGYVWDVFIPHKSDTGLSKGFAFVKFTCKLDAENAIQKLNGSKFEKRLIAVDWAVPKKIFSSDKNDALDSETGQQKLRDDDSRATEDDVEHIDKQSYDGDDSNVDYSSAIEEEGSPSEDNFEKEADIARKVLNNLITSSTKGASVNNDSMCSKENKEPKSNEIVKDADSKASNESEKVSGVSEPEISGRSKLSNKQTEEDDLQRTVFISNLPFECDNEEVKQRFSGFGDVEYFLPVLHQVTKRPRGTGFLKFKTVEAAETAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNIYLTKEGLILEGTPAAEGVSTSDMLKRQELERKKKTKLQSPNFHVSRTRLVIYNIPKSMTEKELKKLCIDAVISRATKQKPVIRQIKFLKDGKKGKVSQEHHSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQGPHDDIAKENDKPVIAEVQTHVKDRKQKRKSQEHDNSVKDSVLNTNGELGSQMANGKSPQGRKYKRQKGNNQSANAESLKENAKALSKKSKNNRDGQNHGDASLEGQNTGIVISGTKSGNKDNVGFRKRKMQNQEEQAGQKVSKKRPKKNKDSAGKDVVDKLDMLIEQYRSKFSHKDSQGNDGEKKASKQLRKWFQS. 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00888 963 MobiDBLite consensus disorder prediction 361 418 - -
Seca9g00888 963 Coils Coil 579 606 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 831 846 - -
Seca9g00888 963 SUPERFAMILY RNA-binding domain, RBD 644 751 IPR035979 GO:0003676
Seca9g00888 963 SUPERFAMILY RNA-binding domain, RBD 501 672 IPR035979 GO:0003676
Seca9g00888 963 SMART rrm1_1 276 349 IPR000504 GO:0003723
Seca9g00888 963 SMART rrm1_1 502 580 IPR000504 GO:0003723
Seca9g00888 963 SMART rrm1_1 19 92 IPR000504 GO:0003723
Seca9g00888 963 SMART rrm1_1 654 745 IPR000504 GO:0003723
Seca9g00888 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Seca9g00888 963 FunFam RNA-binding motif protein 28 652 747 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 77 132 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 804 824 - -
Seca9g00888 963 CDD RRM2_RBM28_like 276 352 - -
Seca9g00888 963 CDD RRM1_RBM28_like 19 97 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 439 496 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 770 803 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 94 132 - -
Seca9g00888 963 CDD RRM3_RBM28_like 501 582 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 888 909 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 848 864 - -
Seca9g00888 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 584 IPR000504 GO:0003723
Seca9g00888 963 SUPERFAMILY RNA-binding domain, RBD 19 261 IPR035979 GO:0003676
Seca9g00888 963 MobiDBLite consensus disorder prediction 471 488 - -
Seca9g00888 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Seca9g00888 963 FunFam Putative RNA binding ribonucleoprotein 430 598 - -
Seca9g00888 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Seca9g00888 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
Seca9g00888 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 561 IPR000504 GO:0003723
Seca9g00888 963 Gene3D - 434 598 IPR012677 -
Seca9g00888 963 Gene3D - 2 110 IPR012677 -
Seca9g00888 963 Gene3D - 652 747 IPR012677 -
Seca9g00888 963 SUPERFAMILY RNA-binding domain, RBD 271 355 IPR035979 GO:0003676
Seca9g00888 963 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 963 - -
Seca9g00888 963 Coils Coil 744 764 - -
Seca9g00888 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 761 IPR000504 GO:0003723
Seca9g00888 963 MobiDBLite consensus disorder prediction 759 963 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 449 470 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 361 397 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 865 887 - -
Seca9g00888 963 MobiDBLite consensus disorder prediction 916 957 - -
Seca9g00888 963 CDD RRM4_RBM28_like 653 750 - -
Seca9g00888 963 Gene3D - 262 396 IPR012677 -
Seca9g00888 963 FunFam - 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00888 Seca-Chr9 17099920 17110180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00888 19 98 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.80e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00888 K14573 - gmx:100794821 1497.64