Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00867 ATGGTAACAGAGATGAATAAGTCTGGGAAAGAGATTGCATTGCCATTGAATCAGAGTATTAAGGACAAGCTATCTCTCCAATCTAATGCCTTCAAAGCTCCATCATCCCCCAAGCAACCTTTTTTTATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACAGTGTGTAACATGATAAACAGCCAGCTTCATGATCAACGTGTTGTCCTCATTAATCAAGACTCCTTTTACTACTCATTGAGTGGCCAGATGCTGCAGAAAGTTAATGAGTATAACTTTGATCATCCTGATGCCTTTGATACGGAGCTCATGCTTTCAAGTATGGAGAAATTAAAACGTGGACAAGTTGTTACCATACCAAATTATGATATCAACAGCCATAAGAGAAGTGAACCTGGACGTCAGGTTCACCCTGCAGATATAATAGTTTTAGAAGGGATATTAGTTCTTCATGATTCTCGTGTCCGTGATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATGTGCGCCTTTCACGGAGGATTCAACGTCTCTCCATTGAACATGGGAGGAACATTCAGAATGTTCTAGATCAATATTCCAGATTTGTAAAGCCCAGTTTTGAAGATTTTGTACTGCCAACAAAAAAATATGCTGATATTATCATCCCAGGTGGAGGAGATAATGATGTTGCCATTGATTTGATAGTACAAAATATACGTACAAAACTTGGCCAGCATGATCTGTGTAAAATATATCCAAATATTTTTGTTATTTTTTCAACATTTCAGATAAAGGGAATGCATACTCTCATACGTGATGTCAGAACAACTAAGCATGACTTTGTCTTTTACTCAGACCGTCTTATTAGGCTGGTTGTGGAACATGGACTTGGTCACCTTCCTTTTACTGAAAAGCAGGTCACAACACCAACAGGATCTGTATACTCTGGTGTAGTTTTCTGCAGTAGGCTGTGCGGAGTATCAGTTATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGCTGTAAGGGAATCAAAATTGGTAAAATCCTTATTCATGGACATGGCACAAATGGCCGGCAGCAGTTAATCTATGAGAAGCTACCATCAGATATTGCAAGTCGTCATGTGCTGCTACTTGATCCAGTTCTAGCCACAGGAAATTCTGCAGTCAAAGCTATCTCTCTGCTTCTCAAGAAGGGTGTACCAGAATCCAACATCATCTTTCTAAATTTAATAGCGGCACCACAGGGAATAAATGCAGTTTGTGAGAGATTTCCAATGCTAAAACTTGTAACATCTGAGATTGATGCATCACTAAATGAGCACTCTCATGTGATCCCTGGCTTGGGGGAGTTTGGAGATCGTTACTTTGCCACTGATGATTAG 1386 0.3954 MVTEMNKSGKEIALPLNQSIKDKLSLQSNAFKAPSSPKQPFFIGVAGGTASGKTTVCNMINSQLHDQRVVLINQDSFYYSLSGQMLQKVNEYNFDHPDAFDTELMLSSMEKLKRGQVVTIPNYDINSHKRSEPGRQVHPADIIVLEGILVLHDSRVRDLLNMKIFVDEDSDVRLSRRIQRLSIEHGRNIQNVLDQYSRFVKPSFEDFVLPTKKYADIIIPGGGDNDVAIDLIVQNIRTKLGQHDLCKIYPNIFVIFSTFQIKGMHTLIRDVRTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQQLIYEKLPSDIASRHVLLLDPVLATGNSAVKAISLLLKKGVPESNIIFLNLIAAPQGINAVCERFPMLKLVTSEIDASLNEHSHVIPGLGEFGDRYFATDD. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00867 461 PANTHER URIDINE KINASE 25 370 - -
Seca9g00867 461 Gene3D - 243 459 IPR029057 -
Seca9g00867 461 PRINTS Uridine kinase signature 115 130 - -
Seca9g00867 461 PRINTS Uridine kinase signature 185 196 - -
Seca9g00867 461 PRINTS Uridine kinase signature 70 81 - -
Seca9g00867 461 PRINTS Uridine kinase signature 171 181 - -
Seca9g00867 461 PRINTS Uridine kinase signature 40 57 - -
Seca9g00867 461 PRINTS Uridine kinase signature 207 220 - -
Seca9g00867 461 CDD UMPK 42 239 IPR000764 -
Seca9g00867 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 232 IPR027417 -
Seca9g00867 461 CDD PRTases_typeI 321 432 IPR000836 -
Seca9g00867 461 FunFam Uridine kinase 36 242 - -
Seca9g00867 461 SUPERFAMILY PRTase-like 242 459 IPR029057 -
Seca9g00867 461 Gene3D - 36 242 IPR027417 -
Seca9g00867 461 NCBIfam uridine kinase 40 239 IPR000764 -
Seca9g00867 461 Pfam Uracil phosphoribosyltransferase 257 459 - -
Seca9g00867 461 Pfam Phosphoribulokinase / Uridine kinase family 42 228 IPR006083 GO:0005524|GO:0016301
Seca9g00867 461 FunFam Uridine kinase 243 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00867 Seca-Chr9 16869390 16874761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00867 26 461 PRT Gene Family AT4G26510 73.696 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00867 K00876 - gmx:100803453 708.753