Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00852 ATGTACACTTCTAGGAAGAAAATCCTCAAGGATAAGGATGTTGAGCCGACTGAATTTGAGGAGACAGTTGCACAGTACTTATTTGACTTGGAGAACACCAACCAGGATCTCAAAAGTGACTTGAAAGATCTCTATATAAACCAAGCAATTCAAATGGATGTGGCTGGGAATCGCAAGGCTGTTGTCATCTATGTGCCTTACAGAGTGAGGAAGGCATTCCGCAAAATTCATCTTCGACTTGTCAGGGAGTTGGAGAAGAAGTTTAGTGGAAAGGATGTTGTCTTGATTGCCACAAGAAGGATCGTGCGGCCACCAAAGAAAGGCTCTGCTGTTCAGAGGCCACGAACTCGCACCTTGACTGCTGTCCATGATGCCATGCTGGAGGATGTTGTGCATCCTGCAGAGATTGTTGGCAAAAGGATCAGATATCGACTTGATGGGTCAAAAATAATCAAGGTAGTTTTCTTGGACCCTATGGAGCGCAATAACACTGAGTACAAGCTGGAGACTTTTTCTGGAGTTTACAGGAAACTTACCGGAAAAGATGTAGTATTTGAGTATCCGATCACAGAAGCATGA 579 0.4404 MYTSRKKILKDKDVEPTEFEETVAQYLFDLENTNQDLKSDLKDLYINQAIQMDVAGNRKAVVIYVPYRVRKAFRKIHLRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRTRTLTAVHDAMLEDVVHPAEIVGKRIRYRLDGSKIIKVVFLDPMERNNTEYKLETFSGVYRKLTGKDVVFEYPITEA. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00852 192 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca9g00852 192 PANTHER 40S RIBOSOMAL PROTEIN S7 1 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca9g00852 192 Pfam Ribosomal protein S7e 7 187 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca9g00852 192 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00852 Seca-Chr9 16556520 16558738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00852 1 192 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 79.688 3.05e-112 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00852 K02993 - gmx:100500684 355.14