Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00842 ATGCGGATGAGCTGCAATGGATGCCGTGTGTTACGAAAAGGTTGTAGCGAAGATTGTAGCATCAGACCTTGCTTGCAATGGATCAAGAGTCCAGAATCACAAGCCAATGCAACTGTCTTTCTCGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCATCAACGCTGGCCCTGAACACCTTCGTCCAGCGATTTTTCGTTCATTGTTGTATGAGGCATGCGGGAGGATCGTGAACCCGATTTATGGTTCCGTTGGTTTGTTATGGTCAGGGAGTTGGCAGTTATGCCAATCCGCCGTGGAAGCCGTTTTGAAGGGCGCGCCGATCACGCCGATAGCTTCGGAGGTTGCGGCAAGCGGGCGGGGCCCACCACTTAAGGCCTATGACATACGCCACGTGTCCAAGGATGAGAACTCCGCCGCGTCCAAAGAGGCTCAGCGAGTCAAGACTCGTTCCCGGTTCAAGCGGACCGGCGGTTCGGTCTTAAAGCCTAAGGCCACCAAGGGAACCGGTTACGTTCCGGTTGAAGAGGACCGGTCTGCGAGTAACGAGTCGTCGCTTAGCCATCCGCCTGAAGCGGCGGCTGCGGCGGCGGTGGATGGAGAGAGCAATAAAGAGAGTGAGAGTGTGGTCTCCGTTGAGACTACGATTCTGTTCCATGATGAACCGGAGTCGAACCCGAAGGTGAGTGACCGAGCCGAGGAGAGTGGTGATGATGAGGTTGGTTTGGAGCTGACGCTTGGGTTCGAACCGGCTTCACGTGCGTATCACGTGGTTCCGGTGAAGAAGAGAAGGATTGAGTTGAAGGATTGTAGTGTCTCTGCTGAGATTGAGAATGGCTCGTGCAAGATGGAGCTTGGGCTTGAGCTTGCGGCTTGA 879 0.5484 MRMSCNGCRVLRKGCSEDCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQSAVEAVLKGAPITPIASEVAASGRGPPLKAYDIRHVSKDENSAASKEAQRVKTRSRFKRTGGSVLKPKATKGTGYVPVEEDRSASNESSLSHPPEAAAAAAVDGESNKESESVVSVETTILFHDEPESNPKVSDRAEESGDDEVGLELTLGFEPASRAYHVVPVKKRRIELKDCSVSAEIENGSCKMELGLELAA. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00842 292 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Seca9g00842 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 247 - -
Seca9g00842 292 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Seca9g00842 292 PIRSF AS2 1 288 IPR017414 -
Seca9g00842 292 MobiDBLite consensus disorder prediction 136 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00842 Seca-Chr9 16403495 16405105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00842 1 288 AS2 family AT3G02550 61.092 6.44e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g00842 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00842 - - gmx:100814175 412.535