Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00840 ATGGCTTTCTCAGCTTGCTCTGCTCTCCTTGCCAAGAAGAAGGTTCTCTTCATTATGGGTGCAACTGGCACAGGAAAAACCAAACTTTCCATTAAGCTAGGCACCCAATTCCCCTCTGAAATCATCAATTCTGACAAAATCCAAGTCTATAAGGGCCTTGACATTTTGGTCAACAAAATTTCAGAGTCTGAACGTTGTGGCATTCCCCATCACTTGCTAGACTTCATTGACAATCCTGAATCCAATTTCACTGTTGATGACTTTTGCAAGCAAGCACTCTCAGCCATTGATCTCATTCATGACAATGGACACTTACCCATTATTGACCCCAAAAATGAATTTCGTTCCAAATATGATTGTTGTTTCATTTGGCTTCATGTGTCTCTGCCTGTGTTATTTCAGTACTTAGACCAAAGGGTTGATGAAATGGTTGATGCAGGGCTTGTGGATGAAGTTAGAGAGGCTTTTGTCCCTGGAGCCAATTACTCCAATGGGATTAGAAGAGCCATTGGGGTTCAGAAAGAAGCATGTCATGATGAGGCTTATAAGGAAAAGATGCTTCAAGATGCCATTAAGAGGACTAAAGAAAGTACTCACAAGTTAGCTGAAACTCAACTTATGAAGATTTTTAGGCTGAATAATGAGCTTGGATGGGGAATGAACACGATTGATTCAACAGAGATATTTTTGGCTATTTTAAGAGGAGAAAAGTATATGAATCTGTATGAAGAGGTTGTATTCAAACCAAGCTTGAAGATTGTGAAAAGGTTTCTAGAGGGGACAACCCAAGACCTTGATACCAAAATGAAGAACAAGATGTATGTTCCGCTGTATTAA 837 0.3978 MAFSACSALLAKKKVLFIMGATGTGKTKLSIKLGTQFPSEIINSDKIQVYKGLDILVNKISESERCGIPHHLLDFIDNPESNFTVDDFCKQALSAIDLIHDNGHLPIIDPKNEFRSKYDCCFIWLHVSLPVLFQYLDQRVDEMVDAGLVDEVREAFVPGANYSNGIRRAIGVQKEACHDEAYKEKMLQDAIKRTKESTHKLAETQLMKIFRLNNELGWGMNTIDSTEIFLAILRGEKYMNLYEEVVFKPSLKIVKRFLEGTTQDLDTKMKNKMYVPLY. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00840 278 Gene3D - 12 258 IPR027417 -
Seca9g00840 278 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 129 220 - -
Seca9g00840 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 158 IPR027417 -
Seca9g00840 278 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 12 258 IPR039657 -
Seca9g00840 278 Pfam IPP transferase 113 206 - -
Seca9g00840 278 Pfam IPP transferase 48 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00840 Seca-Chr9 16359807 16360709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00840 116 263 C2H2 Transcription Factor Family AT2G27760 34.066 4.39e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00840 K10760 - gmx:121173984 371.703