Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00839 ATGGCTTTCTCAGCTTGCTCTGCTCTCCTTGCCAAGAAGAAGGTTCTCTTCATTATGGGTGCAACTGGCACAGGAAAAACCAAACTTTCCATTAAGCTAGGCACCCAATTCCCCTCTGAAATCATCAACTCAGACAAAATCCAAGTCTATAAGGGCCTGGACATTTTGGTCAACAAAATTTCAGAGTCTGAACGTTGTGGCATTCCTCATCACTTGCTAGACTTCATTGACAATCGTGAATCCAATTTCACTGTTGATGACTTTTGCAAGCAAGCACTCTCAGCCATTGATCTCATTCATGAAAATGGACACTTACCCATTATTGTGGGAGGGTCAAATAACTATCTTGAAGCATTAGTTGAGGACCCCAAAAATGAATTTCGTTCCAAATATGATTGTTGCTTCATTTGGCTTCATGTGTCTCTGTCTGTGTTATTTCAATACTTAGACCAAAGGGTTGATGAAATGGTTGATGCAGGGCTTGTGGATGAAGTTAGAGAGGCTTTTGTCCCTGGAGCCAATTACTCCAATGGGATTAGAAGAGCCATTGGGGTTCCTGAGTTTGAACAATATCTTTTGGTAGAGAAAGAAGCATGTCATGATGAGGCTTATAAGGAAAAGATGCTTCAAGATGCCATTAAGAGGACTAAAGAAAGTACTCACAAGTTAGCTGAAACTCAACTTATGAAGATTTTTAGGCTGAATAATGAGCTTGGATGGGGAATGAACATGATTGATTCAACAGAGATATTTATGGTTGTTTTAAGAGGAGAAAAGTATATGAATTTGTATGAAGAGGTTGTATTCAAACCAAGCTTGAAGATTGTGAAAAGGTTTCTAGAGGGAACAACCCAAGACCTTGATACCAAAATGAAGAACAAGATGCATGTTCCGATGTTTTAA 903 0.392 MAFSACSALLAKKKVLFIMGATGTGKTKLSIKLGTQFPSEIINSDKIQVYKGLDILVNKISESERCGIPHHLLDFIDNRESNFTVDDFCKQALSAIDLIHENGHLPIIVGGSNNYLEALVEDPKNEFRSKYDCCFIWLHVSLSVLFQYLDQRVDEMVDAGLVDEVREAFVPGANYSNGIRRAIGVPEFEQYLLVEKEACHDEAYKEKMLQDAIKRTKESTHKLAETQLMKIFRLNNELGWGMNMIDSTEIFMVVLRGEKYMNLYEEVVFKPSLKIVKRFLEGTTQDLDTKMKNKMHVPMF. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00839 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 171 IPR027417 -
Seca9g00839 300 Gene3D - 12 280 IPR027417 -
Seca9g00839 300 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 12 280 IPR039657 -
Seca9g00839 300 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 142 242 - -
Seca9g00839 300 FunFam Adenylate isopentenyltransferase 5, chloroplastic 142 242 - -
Seca9g00839 300 Pfam IPP transferase 126 228 - -
Seca9g00839 300 Pfam IPP transferase 48 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00839 Seca-Chr9 16343772 16344674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00839 129 285 C2H2 Transcription Factor Family AT2G27760 36.264 1.62e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00839 K10760 - gmx:121173984 410.609