Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00806 ATGTTCCCTTACAGCTCCAACCCTTACCCTTCCTTCCCCTCTTCATCTTCTTCTCCATTCCTTCCTTTTCCTTTCCTCAACCCTGAAAATGCTTCTGCAACTAACAACACCCTCTTCCATGATCCATTTTCTGTTCCTTACATACCAACCCATCACCACAACACCAATCCAATCCCAGAAACACTGACCAATTTAGTAGATAACTGTGCTGCTTCTTCAGCAGTAATGCCTAAACAGGACCCAAGTGGTGGTGGTGGTGCTCACTATGGCATTTCCTGTTTGCTCACAAAGAAACCAGCAAAGAAAGATAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGAGACCGAAGGGTGAGACTTTCCATTGAGATCGCTAGAAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGTAACACCCTTGAGTGGCTTTTCAACAAGTCAAAGAAAGCAATTAAGGAGTTAGCTAAGAGCAAAAACAGCAACAACAGTGATGGCTCATCATCTTCTGAGTGTGAAGACTGTGAAGTGGTTTCAGGGATGAAACAACAACATGAAGCACTCATAGCTGATACTCCAAACCTACAACAACAACAAGGGTTAGATTCAAACGACAAGTCGTTTATATGTGATGCTGCTGGAAAAGAGAGGAAGTTGAAAAGGGCACAGAAGGAACCTGCTTGTGTTCGTGCAAAGATGAAAGAGTCAAGAGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGGTGCAGCAAGATCACATGAAGAAAAAGTACCCTGCAAGTGAAAACCATCAAATCATTCACCTTGAGGATTGTGCAAGATCATCTCCACCTAATAAGCTTGTTCACCCTCACCCTCATCATCATCACCACCTTGTTGGTGGTAGTGAAGCACCAAGAGATGACTTCAATGTTATTGAAGAATCCATTGTGATCAAGAGAAAGTTGAAGCCATCATTGATGTCTTCTTCTTCTTCTCATCATCATCATCACCATCACCAAAACCTTGCAATCCCTAAGGAAGCAAGTTTCAACAACAACAGTGACTTTCACTCTTTCCCAAATTTATCTCCAAATTGGGATGCTTCTAATGGTGCTGCCACTGCTCGCTCCAACTTCTGTGCAATAGCCAGCATGAATCTCTCAACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTCTACACTAG 1227 0.4319 MFPYSSNPYPSFPSSSSSPFLPFPFLNPENASATNNTLFHDPFSVPYIPTHHHNTNPIPETLTNLVDNCAASSAVMPKQDPSGGGGAHYGISCLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAIKELAKSKNSNNSDGSSSSECEDCEVVSGMKQQHEALIADTPNLQQQQGLDSNDKSFICDAAGKERKLKRAQKEPACVRAKMKESREKARARARERTSNKVQQDHMKKKYPASENHQIIHLEDCARSSPPNKLVHPHPHHHHHLVGGSEAPRDDFNVIEESIVIKRKLKPSLMSSSSSHHHHHHHQNLAIPKEASFNNNSDFHSFPNLSPNWDASNGAATARSNFCAIASMNLSTGLQIFGKSWEECTNPRLH. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00806 408 MobiDBLite consensus disorder prediction 161 178 - -
Seca9g00806 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 96 357 IPR005333 GO:0003700
Seca9g00806 408 MobiDBLite consensus disorder prediction 237 266 - -
Seca9g00806 408 ProSiteProfiles R domain profile. 238 255 IPR017888 -
Seca9g00806 408 ProSiteProfiles TCP domain profile. 101 159 IPR017887 -
Seca9g00806 408 MobiDBLite consensus disorder prediction 161 180 - -
Seca9g00806 408 Pfam TCP family transcription factor 100 258 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00806 Seca-Chr9 15673458 15675793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00806 38 260 TCP Transcription Factor Family AT1G67260 38.889 4.48e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca9g00806 TCP 7.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00806 - - gmx:100791288 424.861