Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00770 ATGGAAGCTGATGAACCACTTCGACTTCGTCATCAATCTCACGTTCAAGGTATGGAACGGGTGGTGGCAACGGTGAGTGGTTACCATGGCTCGGAGCGGTTCAACCTGATCAAGCTGATTTCACATTCTGGAGCCAACTACGTTGGGGCCATGTCAAAATCAATAACACACCTGGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATTGCTCGAAAGTTTAGAATACATATAGTTAACCACCGATGGATTGAAGATTGCATCAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATATCTTGCAAAGTGGATTTGAAGTAGGGCCGTTGATACTGGAAGTTCCGGTCACTGTTCAAACAGGTAGCATAACGAAGAATAAAGTTGTTATCGACCTCAGTTCTGAAGTTTGTGGAAATTCTGTTCTGGAAGATTCTTGCTTATTGAAAAAGCATGAGGAGTCAAGTTCGTATTCATCTAGACTGTCAAGGAAAGGAAAAAGAAATGTTTGCAGTGGTAGTGGAACTAGTACTGCGTCCGGACTTTCTCGTAAAGGAAGAAGGCTGATGAAAAATGTTGTTGATGAAGTGGGATTGGATCCTTTAATTTTGGATTTAAGCTCAGATGACCACCTTTGCAGAATGGATAGACTACACACTGAAGCTGCAGCTACCTCTAGCCTTTCTGGTGGTGCCAATACTAACAATATTCAAGAAAATAATGAAGGAACCGATGTTCGATTATGTAATCAAAGTACAACTGTCAATGGAGGTTCAGATGGCATTGAGCAGAACAAAGATTCAAATCATATATCTACTCTTAGTAGTTCAACTTTGTTTATAGAAGATCCCTCACCTGTGGCCCAAACATCAACAGATTTATGTTCCAATGCTGAAAAGGTCACAGATAATGATCAAGTTGATAGCATTGCTGGCTTGCCTACTTCAGATGAGCTGTCATGTGTTATATGTTTCACAGATTTCAGTTCAACAAGGGGGATTTTGCCGTGTGGACATCGATTTTGTTTCCCATGCATCCAGAGTTGGGTTAATCATAGGACTTCAATGGGAAAAATATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATCAAGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTATACTCCCAAACAATCCCATGTGACAATTCCGCTTCAGATATTTTTATCCCCATGGATCAAGAATTACCTGATAATAGCTTCGAGGCTATGTCATGA 1248 0.4095 MEADEPLRLRHQSHVQGMERVVATVSGYHGSERFNLIKLISHSGANYVGAMSKSITHLVCWKFEGKKYDIARKFRIHIVNHRWIEDCIKEGRRVPEDSYILQSGFEVGPLILEVPVTVQTGSITKNKVVIDLSSEVCGNSVLEDSCLLKKHEESSSYSSRLSRKGKRNVCSGSGTSTASGLSRKGRRLMKNVVDEVGLDPLILDLSSDDHLCRMDRLHTEAAATSSLSGGANTNNIQENNEGTDVRLCNQSTTVNGGSDGIEQNKDSNHISTLSSSTLFIEDPSPVAQTSTDLCSNAEKVTDNDQVDSIAGLPTSDELSCVICFTDFSSTRGILPCGHRFCFPCIQSWVNHRTSMGKISTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCDNSASDIFIPMDQELPDNSFEAMS. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00770 415 ProSitePatterns Zinc finger RING-type signature. 336 345 IPR017907 -
Seca9g00770 415 Pfam Zinc finger, C3HC4 type (RING finger) 320 364 IPR018957 GO:0046872
Seca9g00770 415 SUPERFAMILY BRCT domain 16 102 IPR036420 -
Seca9g00770 415 SMART ring_2 320 364 IPR001841 -
Seca9g00770 415 Pfam twin BRCT domain 21 83 IPR001357 -
Seca9g00770 415 ProSiteProfiles BRCT domain profile. 10 101 IPR001357 -
Seca9g00770 415 MobiDBLite consensus disorder prediction 161 182 - -
Seca9g00770 415 MobiDBLite consensus disorder prediction 158 182 - -
Seca9g00770 415 SMART BRCT_7 15 91 IPR001357 -
Seca9g00770 415 PANTHER F5A8.9 PROTEIN 139 405 - -
Seca9g00770 415 SUPERFAMILY RING/U-box 311 372 - -
Seca9g00770 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 390 IPR013083 -
Seca9g00770 415 ProSiteProfiles Zinc finger RING-type profile. 320 365 IPR001841 -
Seca9g00770 415 Gene3D BRCT domain 12 100 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00770 Seca-Chr9 15028969 15034785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00770 55 107 Core DNA Replication Machinery Family AT4G02110 51.852 8.11e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00770 - - gmx:100815034 571.237