LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g00749	ATGTTGAAGGAAGTTATAACAAACAATGGCGGTGGCGGTTCCAACAACTGGTCTCGTGTATGTGACTTGTGTCGATCAGCACCTTGCAGAGTTTACTGCCATGCTGACTCAGCATACCTGTGCTCAGTCTGTGACGCTAGCATCCATGCGGCTAACCGTGTGGCTTCAAGGCACGAGCGTGTGTGGGTCTGTGAGGCTTGTGAACGTGCTCCTGCAGCGTTTCTCTGTAAAGCTGATGCTGCTTCCCTCTGTTCTTCTTGTGATGCTGATATACACTCTGCTAACCCATTGGCTAGTCGCCACCACCGTGTGCCTCTTCTCCCTTTCTCTTTTTCTGCACAAGATCATGAGTTGTTTATAGGTAATCTTAATAATAATAATAATTGTGAAGTAGAGGAATTAGAGGAGGAGGAGGTTGTTGATGAAGAGGAGGATGAGGCAGAAGCAGCTTCATGGTTGCTGCCAAATCCTTTCAAGGAGAGTGATCAGGATTTCTTGTATGGTACTGATGAGTATTTGGACCTTGTGGATTGTAATTCATGTGGTGATTTCAGCAATGTTCACTATGATGATCATCATGATCAACAACAGAACCAACAGCATAATTACAACACTGTCCCTCAGAACTATGCAGTTGTTCCAGTAAAGCGTGGAGGAGAAGCTTCGCGAGCTCATATGCAACAACAATTTCAACAGGGTCTGGATTTTGACTCCTCAAAAGCTGGTTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGCATTGTACCAGAATCAACATTAAGCGACATCTCAGTTTCACATTCAAAATCAACAATAGGGACAAGTGAACTATTTCCTCCAATTCCGATGCCTTCACATCTTGCTCCAATGGACAGAGAGGCCAAAGTCCTAAGATACAGAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATTAGGTATGCTTCAAGGAAGGCCTATGCAGAGAGAAGACCCCGAATTAAAGGTCGATTCGCAAAGAGAACAGATGTAGAAGCTGAAGTGGACCAGATGCTCTCCTCAACTCTGGTGACAGAAGCTGGATGTAGCATTGTTCCCTCTTTTTGA	1110	0.4387	MLKEVITNNGGGGSNNWSRVCDLCRSAPCRVYCHADSAYLCSVCDASIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPLLPFSFSAQDHELFIGNLNNNNNCEVEELEEEEVVDEEEDEAEAASWLLPNPFKESDQDFLYGTDEYLDLVDCNSCGDFSNVHYDDHHDQQQNQQHNYNTVPQNYAVVPVKRGGEASRAHMQQQFQQGLDFDSSKAGFSYDGSLSQSVSVSSMDVGIVPESTLSDISVSHSKSTIGTSELFPPIPMPSHLAPMDREAKVLRYREKKKTRKFEKKIRYASRKAYAERRPRIKGRFAKRTDVEAEVDQMLSSTLVTEAGCSIVPSF.	370

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca9g00749	369	ProSiteProfiles	Zinc finger B-box type profile.	59	106	IPR000315	GO:0008270
Seca9g00749	369	Pfam	B-box zinc finger	61	106	IPR000315	GO:0008270
Seca9g00749	369	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	21	356	IPR045281	GO:0009909
Seca9g00749	369	CDD	Bbox1_BBX-like	63	106	-	-
Seca9g00749	369	Coils	Coil	124	144	-	-
Seca9g00749	369	ProSiteProfiles	CCT domain profile.	300	342	IPR010402	GO:0005515
Seca9g00749	369	ProSiteProfiles	Zinc finger B-box type profile.	16	63	IPR000315	GO:0008270
Seca9g00749	369	Pfam	CCT motif	300	342	IPR010402	GO:0005515
Seca9g00749	369	CDD	Bbox1_BBX-like	20	63	-	-
Seca9g00749	369	SMART	bboxneu5	64	106	IPR000315	GO:0008270

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g00749	Seca-Chr9	14787693	14789467	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g00749	1	369	C2C2-CO-like Transcription Factor Family	AT3G02380	52.105	3.28e-117	342

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Seca9g00749		zf-B_box	5.5e-07	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g00749	K12135		-	gmx:100782635	461.455

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