Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00749 ATGTTGAAGGAAGTTATAACAAACAATGGCGGTGGCGGTTCCAACAACTGGTCTCGTGTATGTGACTTGTGTCGATCAGCACCTTGCAGAGTTTACTGCCATGCTGACTCAGCATACCTGTGCTCAGTCTGTGACGCTAGCATCCATGCGGCTAACCGTGTGGCTTCAAGGCACGAGCGTGTGTGGGTCTGTGAGGCTTGTGAACGTGCTCCTGCAGCGTTTCTCTGTAAAGCTGATGCTGCTTCCCTCTGTTCTTCTTGTGATGCTGATATACACTCTGCTAACCCATTGGCTAGTCGCCACCACCGTGTGCCTCTTCTCCCTTTCTCTTTTTCTGCACAAGATCATGAGTTGTTTATAGGTAATCTTAATAATAATAATAATTGTGAAGTAGAGGAATTAGAGGAGGAGGAGGTTGTTGATGAAGAGGAGGATGAGGCAGAAGCAGCTTCATGGTTGCTGCCAAATCCTTTCAAGGAGAGTGATCAGGATTTCTTGTATGGTACTGATGAGTATTTGGACCTTGTGGATTGTAATTCATGTGGTGATTTCAGCAATGTTCACTATGATGATCATCATGATCAACAACAGAACCAACAGCATAATTACAACACTGTCCCTCAGAACTATGCAGTTGTTCCAGTAAAGCGTGGAGGAGAAGCTTCGCGAGCTCATATGCAACAACAATTTCAACAGGGTCTGGATTTTGACTCCTCAAAAGCTGGTTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGCATTGTACCAGAATCAACATTAAGCGACATCTCAGTTTCACATTCAAAATCAACAATAGGGACAAGTGAACTATTTCCTCCAATTCCGATGCCTTCACATCTTGCTCCAATGGACAGAGAGGCCAAAGTCCTAAGATACAGAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATTAGGTATGCTTCAAGGAAGGCCTATGCAGAGAGAAGACCCCGAATTAAAGGTCGATTCGCAAAGAGAACAGATGTAGAAGCTGAAGTGGACCAGATGCTCTCCTCAACTCTGGTGACAGAAGCTGGATGTAGCATTGTTCCCTCTTTTTGA 1110 0.4387 MLKEVITNNGGGGSNNWSRVCDLCRSAPCRVYCHADSAYLCSVCDASIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPLLPFSFSAQDHELFIGNLNNNNNCEVEELEEEEVVDEEEDEAEAASWLLPNPFKESDQDFLYGTDEYLDLVDCNSCGDFSNVHYDDHHDQQQNQQHNYNTVPQNYAVVPVKRGGEASRAHMQQQFQQGLDFDSSKAGFSYDGSLSQSVSVSSMDVGIVPESTLSDISVSHSKSTIGTSELFPPIPMPSHLAPMDREAKVLRYREKKKTRKFEKKIRYASRKAYAERRPRIKGRFAKRTDVEAEVDQMLSSTLVTEAGCSIVPSF. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00749 369 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Seca9g00749 369 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Seca9g00749 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 356 IPR045281 GO:0009909
Seca9g00749 369 CDD Bbox1_BBX-like 63 106 - -
Seca9g00749 369 Coils Coil 124 144 - -
Seca9g00749 369 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Seca9g00749 369 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Seca9g00749 369 Pfam CCT motif 300 342 IPR010402 GO:0005515
Seca9g00749 369 CDD Bbox1_BBX-like 20 63 - -
Seca9g00749 369 SMART bboxneu5 64 106 IPR000315 GO:0008270
Seca9g00749 369 SMART bboxneu5 16 63 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00749 Seca-Chr9 14787693 14789467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00749 1 369 C2C2-CO-like Transcription Factor Family AT3G02380 52.105 3.28e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca9g00749 zf-B_box 5.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00749 K12135 - gmx:100782635 461.455