Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00739 ATGTCTCGTTATTCCTCCAATCCCTTCGCAACCACTCATTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAAACTCGCTTATCCGAGCGTTCTCGCCCTTGTTCCTGCGATGACATAAACCCCTTCTCCGGGGTCGTTTGCGATCTTCACCACCGCGAACGAGGGTTAGGGTTAGGGATAGGGTTTGGAAATGAAATTGAAACCCAAAATAACGATCACGACGATGGGGTTTTTTATTTTTCGGTGGGTGGTGATTCAGGTGGGCTTAGGGTTGTCGGGTTCGGTTCCGATTCCGATTCGAGTAGCGAGGAGGGCGAGTTTGGTTCTGGGAGGAACGGTGATGAGAGGGTTAATGGTGGATTTGATGATTTTGATGTTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACCCTCAATGAATGGGAGGAGGTTGAAGAGAGGGTGAATGAAAGAGAAGATTCTAGCTTGGTGATTGATGAGGATGAGGTTGAGGTTGATGGTCAATCAGTGGCTTCTGGTTTCGAGGAGGAGGAACCTGGTGAAGAGGCGCTGAGGTACCTGGAATGGGAAATTCTCTTAGCTGTTAACAATTTGGAGAGGAATGCTGGGTTGGAACATGATGATGAGAACTTTGCTGATTCATATTTAGCGATTCAAGATGGCTATATATCCACATCTGATTACGACATACTTTTTGGGCAGTTTCTGGAGAATGAGAGTGCCTTGAAGGGTAGCCCTCCAGCTGCCAAGAGTTTTGTGGAGAATCTCCCTCTGGTGGAATTGACAGAGGAGGAGTTGCGGGGGAAGGAGGTGGCTTGTGCCATTTGCAAAGATGAGATCATGTTGGAGGAGAAGGTGAGGAGGCTCCCTTGCTCCCATTGTTATCATGGAGATTGCATTTTGCCATGGTTGAGTATTCGCAACACATGCCCTGTTTGCCGGTTTGAGTTGCCCACAGATGATCCTGATTATGAGCAGAGTAAGTTCCACAGTGCCGCACGAGGTCTGTTGGAGCTTGCAGCACAGATGCATTTTTGA 1065 0.4836 MSRYSSNPFATTHSDSDSDSVSCFVTDLFETRLSERSRPCSCDDINPFSGVVCDLHHRERGLGLGIGFGNEIETQNNDHDDGVFYFSVGGDSGGLRVVGFGSDSDSSSEEGEFGSGRNGDERVNGGFDDFDVRLCWDSLCLEDQRTLNEWEEVEERVNEREDSSLVIDEDEVEVDGQSVASGFEEEEPGEEALRYLEWEILLAVNNLERNAGLEHDDENFADSYLAIQDGYISTSDYDILFGQFLENESALKGSPPAAKSFVENLPLVELTEEELRGKEVACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKFHSAARGLLELAAQMHF. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00739 354 SMART ring_2 282 322 IPR001841 -
Seca9g00739 354 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g00739 354 MobiDBLite consensus disorder prediction 100 122 - -
Seca9g00739 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 329 IPR013083 -
Seca9g00739 354 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Seca9g00739 354 SUPERFAMILY RING/U-box 270 330 - -
Seca9g00739 354 Pfam Ring finger domain 282 323 IPR001841 -
Seca9g00739 354 FunFam E3 ubiquitin-protein ligase RING1-like 243 329 - -
Seca9g00739 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 178 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00739 Seca-Chr9 14560615 14561679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00739 90 352 C3H Transcription Factor Family AT3G02340 40.702 1.02e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00739 - - gmx:100812037 461.07