Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00729 ATGGTTCGTCAAACTGATTTAGTTATCATTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTACAAGAAACGTGCTCATCTTAGTCGATCTGTGAGTGAGCCTAGTGTAACAACTCTTCCAATACGAACAAATGGACTGGGAACAAGCACTGACTTTAGTGCATCTCTCACTAGTTCCGTAGTCACATCAAGATCAGAAATTCTACAAAAAAATTCCCATTTCAGTTGGTGGGGTCATCAAAACAAAGATCGATTTGCTTCAGCATCAGGCATTCTAAAGTATTCATACAAAGAAATTCAAAAGGCCACACAAAATTTCACAACCACCTTGGGAGAAGGATCATTTGGCACGGTTTATAAAGCTACAATGCCTACAGGAGAGGTGGTAGCTGCGAAGGTGCTTGCACCCAATTCCAAACAAGGGGAGAGAGAATTCCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAGCACATACTGGTTTATCAGTTCATGAGTAATGGAAGTTTAGCAAATCTTTTATATGGTAAGAGTGAAGAAAAGTTGTTGAGTTGGGATGAAAGGCTGCAAATTGCTATTGATATTTCACACGGAATAGAGTATCTTCATGAAGGAGCAGTCCCTCCTGTCATACATCGCGATTTGAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAAGAAGAGATTTTTGATGGCCGGAATTCTGGTCTTAAAGGTACATATGGTTACATGGATCCGGCATACATATCCACAAGCAAGTTAACAACCAAGAGTGACATATACAGCTTTGGCATCATACTGTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGACCATGATGGTATAGATGAGATACTTGACAAGCAACTTGTGGGAAAATGCAATCTTGTAGAAGTGAGGCAGCTTGCTAAAATTGCACACAAATGCTTACACAAATCACCTAAGAAACGTCCTTCTATAGGTGAAGTTTCACAGAGTATATCAAGGATAAAGCAAAGGAGACTGCGCCATGTGATGGAAGATACCTTGTCATTTGCAAGCAATAACTTTTCCAGAGCTGTGAGTCGATTAGAAGATCGACAAGTTGAATTAAGTAGGATAGCCACCACGAACCTAACAGAAACTGTATGA 1281 0.4059 MVRQTDLVIIGVSVGLALGILISCLIFFGIRWYKKRAHLSRSVSEPSVTTLPIRTNGLGTSTDFSASLTSSVVTSRSEILQKNSHFSWWGHQNKDRFASASGILKYSYKEIQKATQNFTTTLGEGSFGTVYKATMPTGEVVAAKVLAPNSKQGEREFQTEVLLLGRLHHRNLVNLVGYCVDKGQHILVYQFMSNGSLANLLYGKSEEKLLSWDERLQIAIDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIILFELITAIHPHQNLMEYINLAAMDHDGIDEILDKQLVGKCNLVEVRQLAKIAHKCLHKSPKKRPSIGEVSQSISRIKQRRLRHVMEDTLSFASNNFSRAVSRLEDRQVELSRIATTNLTETV. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00729 426 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Seca9g00729 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Seca9g00729 426 Pfam Protein kinase domain 120 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00729 426 SUPERFAMILY Protein kinase-like (PK-like) 103 385 IPR011009 -
Seca9g00729 426 PANTHER OS01G0750732 PROTEIN 11 382 - -
Seca9g00729 426 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Seca9g00729 426 SMART serkin_6 116 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00729 426 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Seca9g00729 426 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
Seca9g00729 426 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 403 - -
Seca9g00729 426 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 90 191 - -
Seca9g00729 426 ProSiteProfiles Protein kinase domain profile. 116 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00729 426 CDD STKc_IRAK 122 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00729 Seca-Chr9 14427860 14433616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00729 8 382 Receptor kinase-like Gene Family AT1G79620 37.755 5.37e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca9g00729 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00729 - - gmx:100819995 758.444