Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00722 ATGGGTTCTGTTTGTTGTTGTTTGAGTTTTGATGATTTTGAAGATTATGTAAATCCAAATAGTCATGTATATAGGAACTGCGTGTGCCTTAGTTGCTTGATACAAAACCTTTTGAATGTGTATGCATCAATATTCCGTAGAGGGGAAGTGCATTCAATTCCTTCATCTATTCAAGGAACAGCTTCTATGACTTCTGCAACATCACTTGACAATTCTCTATCTGACATGTACCGTTCTCCGCCAAGGCCCTTACCCTATGATGCAGAACCCAGATATTTCCGCTCACAACGTGATGGACTAGTTTCAAGGCGTGAGAAGAGTTCAAGTCATTCAAATGAGGAAACAGAACCTCTAAGAAGTGATGTAGATGTGGATCCAGAATCTTTAAGTTCAGGAGACAAATGGAATGAATGTACTTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTTCCATCAGCAAAATATACAACTGGAGTTGGACATGTTTATTCATCATCGGAAGAGGAGGATGTCTGTCCAACCTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACACAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGCGGAAAGGTGATGGTATTCGATGAAACGGTTTACTCTTGA 690 0.3971 MGSVCCCLSFDDFEDYVNPNSHVYRNCVCLSCLIQNLLNVYASIFRRGEVHSIPSSIQGTASMTSATSLDNSLSDMYRSPPRPLPYDAEPRYFRSQRDGLVSRREKSSSHSNEETEPLRSDVDVDPESLSSGDKWNECTCEDGSKEYRSKSSLRLPSAKYTTGVGHVYSSSEEEDVCPTCLEEYTKENPKIMTQCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETVYS. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00722 229 CDD RING-H2_AIRP1-like 173 221 - -
Seca9g00722 229 Pfam RING-H2 zinc finger domain 171 217 IPR024766 GO:0008270
Seca9g00722 229 MobiDBLite consensus disorder prediction 98 132 - -
Seca9g00722 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Seca9g00722 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 224 IPR013083 -
Seca9g00722 229 MobiDBLite consensus disorder prediction 98 130 - -
Seca9g00722 229 SUPERFAMILY RING/U-box 172 224 - -
Seca9g00722 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Seca9g00722 229 SMART ring_2 177 217 IPR001841 -
Seca9g00722 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00722 Seca-Chr9 14338145 14344233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00722 1 226 C3H Transcription Factor Family AT5G15790 60.173 7.26e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00722 - - gmx:100777068 436.802