Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00721 ATGGGAAGGGGAAGGATTCAGCTGAAGCAGATCGAAAACAAAATTAGCCGCCAAGTGACCTTTTCAAAGCGGAGAATGGGTCTGCGAAAGAAAGCGCATGAAATCTCTGTGCTCTGTGATGCTCAAGTAGCATTGATTGTCTTTAACGCTAAAGGAAAACTCTTTGAGTTTTCATCTGAATCCAGCATGGAAAACGTCTTGGAGCGATATGAGAGACATGCTCATACAGTGCAACTTGATGGAGCTGATAAAGAATCACAGAGAAACTGGTCCTTGGAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAATTTAAGGAATTTCGTGGGAGATGATCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTCTAAAGCGCATCCGAACAAGAAAGAACCTAGTTATGAATGACTCCATCTCAGAGCTGCAGAAAAAGGCAAAGGCATTACAGGAGCAAAACAACATGCTATCAAAGAAGATTAAAGAGAAAGAGAAGGCAGTGGCTGAACATCCACCCTGCTGGTCAGAAACTCTAGGCCAAAATTCTTCTGCTTTCAACTTGTGCCCTCCAGAGCTACAATCACCACAAAGACTAGTTCCTTCTTTAACACTCGGTGATCTCTAA 657 0.4384 MGRGRIQLKQIENKISRQVTFSKRRMGLRKKAHEISVLCDAQVALIVFNAKGKLFEFSSESSMENVLERYERHAHTVQLDGADKESQRNWSLECFKLTGKVEVLERNLRNFVGDDLDPLSLRELQSLEHQLDTALKRIRTRKNLVMNDSISELQKKAKALQEQNNMLSKKIKEKEKAVAEHPPCWSETLGQNSSAFNLCPPELQSPQRLVPSLTLGDL. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00721 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Seca9g00721 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g00721 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Seca9g00721 218 Coils Coil 143 180 - -
Seca9g00721 218 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g00721 218 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Seca9g00721 218 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca9g00721 218 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca9g00721 218 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00721 Seca-Chr9 14310182 14325570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00721 1 175 MADS-box Gene Family AT1G26310 62.360 1.98e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g00721 K-box 7.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00721 K09264 - gmx:100820188 322.398