Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00720 ATGGGAAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTACTCTGTGATGCTGAGGTTGCCCTTATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTTTGTAGCAGCTCTAGTATGCTCAAAACGCTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGCCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTAAAAGCAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGTGAAGACTTGGGCCCATTGAACACCAAAGATCTTGAGCAGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTCAGGTCCACAAAGACCCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTGACCATGAAGGTAATATTAGTTCACCCCACAACTAGCAAGATTGGCAATATAGCATCCCTCTTGCTTCCTTCTAGCAAAGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCGGGTGATCAAAGTATGGCATATGGTGCACAGAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCCACATTGCAGATAGGCCCTGACTACAGGTACAGTCCTGTAGCCTCAGATCAGCTAACTGCCACAACTCAAGCTCAACAAGTGAATGGCTTTATTCCAGGATGGATGCTTTGA 810 0.4494 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKVILVHPTTSKIGNIASLLLPSSKDEINSRNQYRQTWEAGDQSMAYGAQNAHSQGFFQPLECNPTLQIGPDYRYSPVASDQLTATTQAQQVNGFIPGWML. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00720 269 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca9g00720 269 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca9g00720 269 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca9g00720 269 Coils Coil 124 144 - -
Seca9g00720 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca9g00720 269 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Seca9g00720 269 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g00720 269 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Seca9g00720 269 FunFam MADS-box transcription factor 1 13 87 - -
Seca9g00720 269 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g00720 269 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g00720 269 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca9g00720 269 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g00720 269 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca9g00720 269 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00720 Seca-Chr9 14278115 14283517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00720 1 269 MADS-box Gene Family AT5G15800 68.905 6.43e-123 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g00720 K-box 4.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00720 K09264 - gmx:100785322 446.432