Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00707 ATGACCGGAGCTGAAATGAACCATAATGATAATGAACAACCTAAAAATTTGGAATCTAATGATGAAGGCTTGGTTCATACTGATGAGCAATGTGGTCAACAATCTGATCAACAAGCTGAATGTGAAGTATATCGTGATGGTAATGATGCTATCACAATGAGGCAATTGGTTTGTAATAGGCAGGGAGAGAGATCTGAGAAGCATTTAAATAGAACTGATAGAGTAAGGGAGGCTAAGCCAATAATTCGTACCAAATGTAATTCCAGGATTCGTGTTCACTTAAACTATAAGACTAGGAAATGGAGGGTTGGCTTGTTTGAACCAACTCATAATCATGAGTTGACTCCTGCAAATATGGTTCATTTGCTTCCTGCATATCGTGGCTTGAGTTTTGCAGATAAGGCACAGGGTGGTTATTCTGATTTGGGGTTTTGTAAGAAAGCTTTGTATAATCACATTGATAAGGAGAAAAGGGCACAATTAAAGGATGGTGATGCATTTGCTGCATTGTCCTATCTCCAAGCAAAGTCTGATAACAATCCTATGACCTTTATAAAATTTACAACGACCAAAGATGATAGACTTGAAAATTTGTTTTGGGATGATGTTAGTAGTAGAATAGATTACATATGTTTTGGTGATGTTCTTGCTCTTGACACAACATACAAGAAAAATAAATATAACAGACTACTGGTTATTTTCCGTGGTTATAATCATCATGGTGAAACAACTATTTTTGGATGTGCTCTTGTTGCTGATGAGAAGACTGAAACGTATAAGTGGGTCCTGGAAACATTTTTGGAAGCTATGTTCAATAAAATTCCAAAAGTTGTTGTTACTGATGGTGATGGTTCAATGCGTGAAGCAATCAAGACTGTTTTTCCTGGGGCAGTTCATAGGTTATGTGCATGGCATCTTCACCAAAATGCTTGTGAGAATGTCAAGAATTCTAAATTTCTTGAAGATTTTAAGAACCTTATATATGGAAATTTTAGTAGGCAGAAGTTTGAGGATTTGTGGAACAATGTCATTGAGAAACATGGAATTGGCAATAATAAATGGGTTAGAAAGAGGTATGTACAACACAAAAACAGCCTTGTTGATTTCATGCACAATTTTGAGAGAGCTATCAATGAGTATAGGCACAATGAATTAGCTTTTGATATTAAGTCTTTGTACACTGAACCTGTCTTGACTACTGCATTAGAAAAGTCTGAGGTTGGTAATTCAGTTAGGTTGAAGCTAAACAAATTTGAAAGTTCTGATTCTGAGTATGTTGTTCTTTTTGACAAGTCTACTGGTGCAATTGCTGCTGCTTGTAACAGGCTTAACAAGGAAGCACACATTAATCCTCATAATCTTTTGAGAAACATTGAAGCTATTCACAAGTTGGTTGATCAGATGGAAAGGCGGGAAGGTAATGACATAAGAATTGATGATATTTCCAAGGTTGTTCGTGATCCTACAGTTGTTAAAACTAAAGAGGGTGCCTCTTCCTCTTCCTCTTCGTACATGATGTTTCATTCTCCAAAAGACACAATGTTTTTCTACTGGACGCTCGTCTATAAAATGGGTCATTCTAGAATAATTCTAGAACACACCATTTCACTGAGAGAGGTTGTAGCACTAAAACAATACCATTTCAAAAACATGACGAGTGGGAATACACCACTGAGAAGGAGTAACAGGAAGAGGGCTCAAAGAACTAAGGCAGATGTTGCTTCTTCCATGAAGTCGTTTGATGGAGAAATCATTTCCACTCTGGCGGTGAAGAAAAAAACTGTAAAAGACGTAGAGATTTCTTCAATGGATACCGGAACCGAGAAGGATAATCAGTTTAATACGATCGGGAACATGGATTGTGAGTTAAATTTGTCAAAGAATCCTTTGGAAAATAGAGATGAGGGAAATATCATGGAAGAGTCAATAGGTAGAAGTCCAAACGTTAAGGTTGAAAGAATCCTGAAAAAACTATCTGAGGGTGAAAAGAATGTTTCAGGTAAGAAGGTGTTTTCTTCACCAGTTTCTGCAAAGAGTCGTGAATTTTATTATGACACCTTCATGGGGAAAACGAATCTTCTGAAAAAGGTATTTATACCAATGAATGATGATAATTACCATTGGTACCTTTTTGTTATTGACTTCATTAACAAGGAGGTGGTTTATCTTGATTCCTTCCTCAGTCACCATAAAAGGGAAGTAAGACTAAGAAGTGTGCACACAGTGGTTGATGAGGGGACCGGACTAAGGATTGCTCTTGACCTGGCACTGAATCCAGGAAATGGTCTTAAAGAAGAAATTGAGGATAGGGCGTTGGTTTGGTTCGAAAGTTTGCCTGCTGGTGGTGGTGCTTATGTTGGGACTGGGGCTGGGGCTAATTGA 2382 0.3762 MTGAEMNHNDNEQPKNLESNDEGLVHTDEQCGQQSDQQAECEVYRDGNDAITMRQLVCNRQGERSEKHLNRTDRVREAKPIIRTKCNSRIRVHLNYKTRKWRVGLFEPTHNHELTPANMVHLLPAYRGLSFADKAQGGYSDLGFCKKALYNHIDKEKRAQLKDGDAFAALSYLQAKSDNNPMTFIKFTTTKDDRLENLFWDDVSSRIDYICFGDVLALDTTYKKNKYNRLLVIFRGYNHHGETTIFGCALVADEKTETYKWVLETFLEAMFNKIPKVVVTDGDGSMREAIKTVFPGAVHRLCAWHLHQNACENVKNSKFLEDFKNLIYGNFSRQKFEDLWNNVIEKHGIGNNKWVRKRYVQHKNSLVDFMHNFERAINEYRHNELAFDIKSLYTEPVLTTALEKSEVGNSVRLKLNKFESSDSEYVVLFDKSTGAIAAACNRLNKEAHINPHNLLRNIEAIHKLVDQMERREGNDIRIDDISKVVRDPTVVKTKEGASSSSSSYMMFHSPKDTMFFYWTLVYKMGHSRIILEHTISLREVVALKQYHFKNMTSGNTPLRRSNRKRAQRTKADVASSMKSFDGEIISTLAVKKKTVKDVEISSMDTGTEKDNQFNTIGNMDCELNLSKNPLENRDEGNIMEESIGRSPNVKVERILKKLSEGEKNVSGKKVFSSPVSAKSREFYYDTFMGKTNLLKKVFIPMNDDNYHWYLFVIDFINKEVVYLDSFLSHHKREVRLRSVHTVVDEGTGLRIALDLALNPGNGLKEEIEDRALVWFESLPAGGGAYVGTGAGAN. 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00707 793 Gene3D Adenoviral Proteinase; Chain A 650 753 - -
Seca9g00707 793 Pfam FAR1 DNA-binding domain 48 115 IPR004330 -
Seca9g00707 793 SUPERFAMILY Cysteine proteinases 670 735 IPR038765 -
Seca9g00707 793 Pfam MULE transposase domain 215 309 IPR018289 -
Seca9g00707 793 MobiDBLite consensus disorder prediction 1 22 - -
Seca9g00707 793 PANTHER OS01G0519700 PROTEIN 46 135 - -
Seca9g00707 793 Pfam Ulp1 protease family, C-terminal catalytic domain 695 733 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00707 Seca-Chr9 13953395 13958820 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g00707 MULE 7.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00707 - - ccaj:109792835 456.062