Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00705 ATGGCTGCTCCTTCCGAGATTAATTGGGACAGGCTAGATAAAACAAAGTTCTATGTCGTTGGAGCTGGACTCTTTACGGGTGTTACTGTGGCACTATACCCGGTCTCTGTTGTGAAGACTAGGCTGCAGGTTGCTTCAAAGGATACACTGGAGAGAAATGCACTTTCTGTTGTGAAGGGATTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGCACGGTCATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCACCGCCCTAGAGACCACAAAGGTGGCTTCCTTCAGGATGCTTGAGCCATTCAAATTATCTGAAACTACCCAAGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCGCTTTTGTCACAAGCTGTGTTTGTTCCAATTGATGTGATTAGCCAAAAATTGATGGTGCAAGGATACTCAGGCCATACCCAGTATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGAGGGCGTCCGAGGATTATATAGAGGGTTTGGTTTATCTGTTATGACTTATTCACCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCTTCATGTGGAGATTCTTGGGAGATGGTAAACATGAGAAGGGCACTCCTAGTCTGTCGAAGATTATTTTGGCTCAGGCTGCTGGAGGGATTATTGCTGGGGCCACTGCATCTTGCATTACAACCCCGTTGGATACTATCAAGACACGATTACAGGTGATGGGACATGAAAAGAGAATCACTGTAAAACAAGTTGTTAAAGACTTAATCAAGGAGGATGGTTGGAAAGGTTTATATAGAGGATTAGGTCCAAGATTTTTCAGCATGTCAGCATGGGGCACTTCGATGATATTGGCTTATGAATATCTGAAGCGATTGTGTGCCAAAGATGAAGAGGCAGTTGGTCTGCAAACTGATATTTTTTGA 963 0.4444 MAAPSEINWDRLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERNALSVVKGLLKTDGIPGLYKGFGTVITGAIPARIIFLTALETTKVASFRMLEPFKLSETTQAAIANGIAGMASSLLSQAVFVPIDVISQKLMVQGYSGHTQYSGGLDVARKVLRSEGVRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFMWRFLGDGKHEKGTPSLSKIILAQAAGGIIAGATASCITTPLDTIKTRLQVMGHEKRITVKQVVKDLIKEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEEAVGLQTDIF. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00705 320 PRINTS Mitochondrial carrier protein signature 30 44 IPR002067 GO:0055085
Seca9g00705 320 PRINTS Mitochondrial carrier protein signature 174 192 IPR002067 GO:0055085
Seca9g00705 320 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Seca9g00705 320 Gene3D Mitochondrial carrier domain 18 314 IPR023395 -
Seca9g00705 320 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Seca9g00705 320 Pfam Mitochondrial carrier protein 22 97 IPR018108 -
Seca9g00705 320 Pfam Mitochondrial carrier protein 223 309 IPR018108 -
Seca9g00705 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 305 IPR018108 -
Seca9g00705 320 FunFam Mitochondrial substrate carrier family protein 18 309 - -
Seca9g00705 320 SUPERFAMILY Mitochondrial carrier 10 302 IPR023395 -
Seca9g00705 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Seca9g00705 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 98 IPR018108 -
Seca9g00705 320 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 5 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00705 Seca-Chr9 13942748 13949555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00705 7 310 Chloroplast and Mitochondria Gene Families AT5G15640 77.850 2.35e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00705 K15121 - gmx:100819519 523.087