Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00695 ATGTCTGCCGTTGCCACACCCAATGATCCATTTGCAATGCAAATCGTGTTCGTGGATGAGGAGGGCGGTCAGATTGAAGCAACTGTTGGGAAGCAGTTCATAAGGAAATTTGATAGCTGTGTGGTTGAGGGAGAGGTCTATAAGGTGACTGATTTTGCAATCATCAAGAACCTTGGAAAGTTTAGAGCAACGAGCCATGGTTTCAAGCTGGTTTTCAATGCCACCACCAAATTGTTACCCACACTGGTAGGAAGTATCCCATTTCATGGGCTCTCATTCCTCAAGACCTCCGATATCATGAAAACAAAGGGCCATTCAGACTACCTATTGGATTATATGGGGATCTTGACAGCAGTATCTGATGAGATGACAATGACCTCAAGAGATGGACGAGAGACTAGGTTGATGCAGTTGGAACTGGGTGATGAAACGGGGGAGATAAGGTGTGCAATCTTTGGAGATTTGATTGATGTTGTTGCTGGCTTACTTGCTCTGCCTCGGGTAGGTCTACCTGTGGTTATCCTTCAGGTTGTGAGGGTAAACAAGTATAAAGGAGAGGTAGGGATACAAAATGTGATGAATGCTACGAAGATACTGTGGGAGCCTGACATCCCAGAAGCAATTCAGTTTAAACAAGAGCTGGCTGTGCATGAGGTGGAGTCTGATCTGAAGGTTGGAATGCTGCCCAAGAGTAAAACAATTGTCCCTTTGCGGGATGATTTTTTCAAGCTTTACCCAAGGAAGACCTTGTGCCAATTAGTTGAAACTGAGGAGGAGGGTTATTTCACAACCATGGCAACTATTTCTAAGATTTGTGATGATTATCCTTGGTGGTACATGGCCTGCAGTTGTATGAGAGCTGTGACACAAATTGGAGTAGCATATTTCTGCAAAGATTGTAACTTGCATATGTTTAATGCTATGCCCAGGTATAAGCTGAAGTTGGATGTCAGCGATGGAGATGACTTAGTGAGGCTGGTGCTTTTTTATGGTGAAGCAGTTGATCTTCTGAATAGGTCTTGCGAGGAGCTGGTGATACAGTCAAAGGTTGAGTCGGACTGTGACTTTCCTGAAGAAATCTCCATGTTGGTTGGGAAGGAGGTTTTATTCAAGGTGGAGAAGACAGCTGAAGCTTCTTCCAACTTTGATGGCTCTCTAAAAGTTAAGAGGGTTTGCTCAGACCCTCTATTGATTGATGAGTACAAGCAAAGGCTATGTGAGGATACACCATTAAAGCAAAAGTTTGCACCATTTTTCCCAAAACTTGGCAATGGTGAGGAGAGTAGTGGCACGAAGGAGATCAAAGTTGAGAGTTGTTCAGTCATTACAGAGATTGATGTGACCCCTTTGTCTTATGGTCAACCCTTCAACACACCTGATGCAGAATCTATTATCTCAAAGAGGGAAGCCACTCAATCTCTTGAACCTGCACCCGAACGCAAAAGGAGGGCCAAGGTGAAGCCTGTAAAGTTTGAGTAA 1479 0.4408 MSAVATPNDPFAMQIVFVDEEGGQIEATVGKQFIRKFDSCVVEGEVYKVTDFAIIKNLGKFRATSHGFKLVFNATTKLLPTLVGSIPFHGLSFLKTSDIMKTKGHSDYLLDYMGILTAVSDEMTMTSRDGRETRLMQLELGDETGEIRCAIFGDLIDVVAGLLALPRVGLPVVILQVVRVNKYKGEVGIQNVMNATKILWEPDIPEAIQFKQELAVHEVESDLKVGMLPKSKTIVPLRDDFFKLYPRKTLCQLVETEEEGYFTTMATISKICDDYPWWYMACSCMRAVTQIGVAYFCKDCNLHMFNAMPRYKLKLDVSDGDDLVRLVLFYGEAVDLLNRSCEELVIQSKVESDCDFPEEISMLVGKEVLFKVEKTAEASSNFDGSLKVKRVCSDPLLIDEYKQRLCEDTPLKQKFAPFFPKLGNGEESSGTKEIKVESCSVITEIDVTPLSYGQPFNTPDAESIISKREATQSLEPAPERKRRAKVKPVKFE. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00695 492 SUPERFAMILY Nucleic acid-binding proteins 245 377 IPR012340 -
Seca9g00695 492 SUPERFAMILY Nucleic acid-binding proteins 13 79 IPR012340 -
Seca9g00695 492 CDD RPA1_DBD_B_like 111 212 - -
Seca9g00695 492 Gene3D - 242 409 IPR012340 -
Seca9g00695 492 SUPERFAMILY Nucleic acid-binding proteins 91 215 IPR012340 -
Seca9g00695 492 MobiDBLite consensus disorder prediction 458 492 - -
Seca9g00695 492 Pfam Domain of unknown function DUF223 15 80 IPR003871 -
Seca9g00695 492 Gene3D - 5 80 IPR012340 -
Seca9g00695 492 Gene3D - 85 222 IPR012340 -
Seca9g00695 492 MobiDBLite consensus disorder prediction 473 492 - -
Seca9g00695 492 CDD RPA1_DBD_A_like 6 77 - -
Seca9g00695 492 Pfam Replication factor-A C terminal domain 261 380 IPR013955 -
Seca9g00695 492 CDD RPA1_DBD_C 252 408 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00695 Seca-Chr9 13848613 13855079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00695 17 329 Core DNA Replication Machinery Family AT2G06510 23.304 1.39e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00695 - - lja:Lj6g3v0884310.1 322.783