Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00657 ATGTCTTGCCACATATTTCCAGCGAAACGTCCTACATTAGGCATGTTTGAATCAAAATTTTATGCTTTCAAGGGCAAAATCGATACAGATCAAAAATTTTGGTCAAAATGGCGTTCCCATTTACCCTCTGAGGTCTTCTTTACAGATCCTGTTGGGAATTCTTTCCCAATAGGTATTAGTTCAAAAGGAGATAGTGTTGTCTTTAAAAGAAATTTGAACACAATGGTTAGATTTTATGGGCTCAATAGAAAGCATAATGGTCTATTTTGCTACAAGGGTGGGAACCAATTCTATATAATGGTGGGAAATCGTTATGGGGTTGAAATTAAATATCCCCAAAAGCCAAGTGAGGTAGTAGAAATATCTTCAGATGATAGTGAAAGTGACCATGAAGGTCATGTCGATTCTGTTGATGATGGCAGTGATCATGAGGATTTCCCTTTCTGGATTATGACAATGTCCAAGTCATCTGCTTCAGGGAGGAATGCTTTGCCTATTCCTGCAAAATTTGTCAGAGAGGGGCTTCTGCAAAGTCAGCAGGATTTGACTTTAAGACTTGACAACGGTGAACAGATTCTTTGCAAAATAATTAAAGGTTCTAGGAGGCGGAATGAACGATATCTCGGTAGTGGTTGGTACAAGTTTTGTCGCGACAAAAATTTCAAGGAGGGAGATATGTTGTTGTTTTATTCAAAAGGTGATCCTTACAATTTGTGTGTTAAGATAAAGCGCTCCTAA 738 0.3821 MSCHIFPAKRPTLGMFESKFYAFKGKIDTDQKFWSKWRSHLPSEVFFTDPVGNSFPIGISSKGDSVVFKRNLNTMVRFYGLNRKHNGLFCYKGGNQFYIMVGNRYGVEIKYPQKPSEVVEISSDDSESDHEGHVDSVDDGSDHEDFPFWIMTMSKSSASGRNALPIPAKFVREGLLQSQQDLTLRLDNGEQILCKIIKGSRRRNERYLGSGWYKFCRDKNFKEGDMLLFYSKGDPYNLCVKIKRS. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00657 245 ProSiteProfiles B3 DNA-binding domain profile. 149 245 IPR003340 GO:0003677
Seca9g00657 245 Pfam B3 DNA binding domain 151 244 IPR003340 GO:0003677
Seca9g00657 245 Gene3D - 135 245 IPR015300 -
Seca9g00657 245 CDD B3_DNA 152 244 IPR003340 GO:0003677
Seca9g00657 245 SMART B3_2 150 245 IPR003340 GO:0003677
Seca9g00657 245 MobiDBLite consensus disorder prediction 121 141 - -
Seca9g00657 245 SUPERFAMILY DNA-binding pseudobarrel domain 144 237 IPR015300 -
Seca9g00657 245 PANTHER B3 DOMAIN-CONTAINING 32 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00657 Seca-Chr9 13199211 13200140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00657 120 244 REM Transcription Factor Family AT4G33280 25.547 5.83e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g00657 B3 2.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00657 - K11658 lja:Lj0g3v0086279.1 70.8626