Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00651 ATGGCAATCGCGAGGACCGTGAAAGATGTTTCGCCTCACGAATTCGTGAAGGCATACTCCTCTCACCTCAAGCGTTCTGGAAAGATGGAGCTTCCTGAATGGACTGATATTGTAAAAACTGCAAAATTTAAGGAACTGGCTCCATATGATCCTGACTGGTATTATGTTAGAGCTGCCTCCATGGCAAGAAAGATCTATTTGAGAGGAGGTCTTGGTGTTGGTGCTTTTAGGAGGATCTATGGTGGAAGCAAGAGAAATGGAAGCCGTCCCCCACACTTCTGCAAGAGCAGTGGTGCTATTGCCAGACACATTCTGCAACAATTGCAAAGCATGAACATTGTTGAGATTGATACAAAGGGAGGTAGGAGAATCACTGCTAGTGGTCGAAGGGATCTTGATCAAGTTGCTGGGAGAATTGTGGTTGCTCTTGATTGA 435 0.4552 MAIARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQSMNIVEIDTKGGRRITASGRRDLDQVAGRIVVALD. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00651 144 Gene3D - 1 143 IPR036388 -
Seca9g00651 144 PANTHER 40S RIBOSOMAL PROTEIN S19 3 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca9g00651 144 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca9g00651 144 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Seca9g00651 144 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca9g00651 144 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Seca9g00651 144 FunFam 40S ribosomal protein S19 2 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00651 Seca-Chr9 13117733 13119562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00651 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.234 6.14e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00651 K02966 - gmx:100499800 278.485