Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00645 ATGCTCTTTTGTTCTACACTCGTTATGCTAAACATAATTTCTAGACGGTTTATTGATGTGATATATGCTTGCACAAGACATGGCAGAAAAAGAGAATCCACTACACTTAATCCACGTCCTTGTATCAAGGTGGAATGTGGGGCTAGCCTGCGTATTAAAAGAAATAGTGATGGAAAATGGGTTACTCATAGTTTCATCAAAGATCATAATCATGAACTTTTTCCAACACATGCTCACTATTTTCCTTGCCATAGAGATATCAATCAAGCTCAACTGCAATGCATTGAAACTCCGCAACATGTTGGGGTTAGAACAAGCAAAATTTATGCTGCAATGGCCAAACAACATGGAGGATATGAAAACATCCGGTGTTTGGAGAAAGATATTATAAATCATTTGGATAAAGTTTGTCGTTTGGATTTAGAGTCAGGAGATGCAAATGCAATGTTGGAGTGTAAAAAAACTTCGTTAAAGGATTTTGTTGAAAAATATAAAGTTGTTTTACAAGATAGAGAAGAGGCAGAAATGCAAGCTGATTTTAATACATGGAACAAGCAACCTGTTCTTAAGACTCCATCACCTTTTGAGAAGCAAATGTCGATGATATATACACATGAAGTCTTCAAGAAGTTCCAAGTTTAG 642 0.3583 MLFCSTLVMLNIISRRFIDVIYACTRHGRKRESTTLNPRPCIKVECGASLRIKRNSDGKWVTHSFIKDHNHELFPTHAHYFPCHRDINQAQLQCIETPQHVGVRTSKIYAAMAKQHGGYENIRCLEKDIINHLDKVCRLDLESGDANAMLECKKTSLKDFVEKYKVVLQDREEAEMQADFNTWNKQPVLKTPSPFEKQMSMIYTHEVFKKFQV. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00645 213 Pfam FAR1 DNA-binding domain 15 75 IPR004330 -
Seca9g00645 213 PANTHER OS01G0519700 PROTEIN 18 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00645 Seca-Chr9 13057061 13058430 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g00645 FAR1 8.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00645 - - mtr:112418473 230.335