Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00625 ATGGCTGCGGCGAAACCCCAACGGACTCCAGAGGAAGTGGAGGACATCATCATCCGCAAAATCTTCCTCGTCTCCATCACCGAAATCGAAAACAACACCGATTCGAGAATCGTATACCTTGAATTAACCGCGGCTGAGATTCTCAGCGAAGGGAAGGAGCTTCGCCTCTCACGCGATTGCATGGAGAGGGTTCTCATCGATCGCCTCTCCGGCGATTTCTCCGTTTCCGGTGACGGAGAATCGACTTTCCAGTACCTTATCGGCTGCTACCAACGCGCGCACGATGAGGCCAAGAAAATCGCCAACATGAAGGACAAGAATATTAGGTCAGAGATGGAGGCGGTGGTGAAGCAAGCGAAGAAGCTCTGCGTTTCGTACTGCAGGATTCACCTCGCTAATCCCGAACTCTTCCCGAGCAGGAATTCGAGCTCCGCTGGTGCCGGCGCGTCACCGCTTTTGCCTCTGATTTTTGCAGAGGTAGGCAGTGGGGGAATCGCCGGGTTCAGTAGTGGCGGCGGAGGAGTGAAGAGTCCGCCAGGGTTTTTGGAGGAGTTCTTTAGGGACCCGGATTTTGATAGCTTGGACAGGATTTTGAAAGGGTTGTATGAGGAGTTGAGGGGAAGTGTGATGAAGGTCTCTGCTCTTGGGAATTTCCAGGATTCTCTTAGGGCTTTGTTGTATCTGGTTAGGTTTCCTGCTGGTGCGAAGTCTCTTGTGAACCATGAGTGGTGGATTCCCAAAGGTGTTTACATGAATGGGCGTGCCATTGAAATGACCAGCATTTTGGGGCCCTTTTTCCATATCAGTGCTCTTCCAGATCAAGCCTTTTTCAAGAGCCAGCCTGACATCGGGCAGCAATGCTTTTCTGATGCATCAACTCGGAGACCAGCTGATTTGCTATCTTCATTCTCCACTATCAAAACTGTCATGAATAACTTATATGATGGACTAGCTGAAGTACTCCTCATCCTCCTTAAAAGCACAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAAGTGATCAATTTAAATGCATCTAGGGCTCACATACAGGTTGACCCCATTACTTGTGCAAGTTCAGGCATGTTTATAAATCTCAGTGCTGTCATGCTTCGTCTCTGTGAACCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATCGATCCAAAATATGTACACTACTCAAACCGTTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTGCTGAATGGCTTAATAGTAAAAACCCAGCTAAGGCTGGGGCAATCAATGAAAATAATGATGGTCAGAAACGCTTGCAACAATCTCAAGAGGCCAGTAGCTCCGGTAATAACAATGCTGGTGAGCTTTCGAATGAAAATTCTGCACGTGGTGAAAAGACGAAATATTCATTTATTTGCGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGAATCGTATTATATTCAGGATATTTCTAGGTGTGAAGATGCTCTTTCCACACTTAAAGCCATGCAGGGGCAGTCTGTCACTCCTCAGTTGGAATCAGATATAACTCGACTTGAGAAAGAACTGGAGTTGTACTCACAGGAAAAGTTTTGCTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCAACAACTTGCCCAATGGAATTTGCTACCATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTCGTGCTGGAGGAGTTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGACTTTATCAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCCCGTAGGAGCGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAACCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGTCACAATATTGCCGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCACCGTAATGCCTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGCGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTGAAAGAATTGGAGGCTGAGATGTCAAATAAAGTTGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAATTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCCCAGAGAAAATCACTTAGTCTGAAAGATCCTGAGAAGTATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGTGACAAGAATTCCATCTTCCCAGCTGCCATCTCCAAGGATGGTCGATCATACAATGATCAGACCAAATGCAATCTAACTGCGAATTTGCTGCAGTTGTTTAGTGCTGCTGCAGAGGTCCTTCATAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTGTTCAACTTGGTGCTAAAGCAAAAGTTGCTGCTTCAGAGGCCATGGATACTGAAGCTATTTTAGGAGAAATACCAGACGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGAATTACAGTTGATCGTCCTGTCATCCAGAGGCATCTTCTTAGTGATAGCACTGATCCATTCAACCGTTCTCATCTCACTGTGGATATGCTGATTCCTGATGATGAACTAAAAGCAAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACAAGGTGAAGGGCTAAGCATACAGAGTACCAAGGCCACCATTCAGACCACAAATGGGGAAATGTTGATTGATTAG 3177 0.4397 MAAAKPQRTPEEVEDIIIRKIFLVSITEIENNTDSRIVYLELTAAEILSEGKELRLSRDCMERVLIDRLSGDFSVSGDGESTFQYLIGCYQRAHDEAKKIANMKDKNIRSEMEAVVKQAKKLCVSYCRIHLANPELFPSRNSSSAGAGASPLLPLIFAEVGSGGIAGFSSGGGGVKSPPGFLEEFFRDPDFDSLDRILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPAGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQAFFKSQPDIGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFINLSAVMLRLCEPFLDANLTKRDKIDPKYVHYSNRLKLSGLTALHASSEEVAEWLNSKNPAKAGAINENNDGQKRLQQSQEASSSGNNNAGELSNENSARGEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQESYYIQDISRCEDALSTLKAMQGQSVTPQLESDITRLEKELELYSQEKFCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPTTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLEEFMNFIIMFMASPDFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNKVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDKNSIFPAAISKDGRSYNDQTKCNLTANLLQLFSAAAEVLHRIGEDGRIIQEFVQLGAKAKVAASEAMDTEAILGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPDDELKARIEEFVRSQEMKKQGEGLSIQSTKATIQTTNGEMLID. 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00625 1058 Coils Coil 527 554 - -
Seca9g00625 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 959 1038 IPR013083 -
Seca9g00625 1058 PANTHER UBIQUITINATION FACTOR E4 5 1035 IPR045132 GO:0000151|GO:0030433|GO:0034450
Seca9g00625 1058 ProSiteProfiles U-box domain profile. 959 1033 IPR003613 GO:0004842|GO:0016567
Seca9g00625 1058 FunFam Ubiquitin conjugation factor e4 a 959 1037 - -
Seca9g00625 1058 SMART Ubox_2 963 1026 IPR003613 GO:0004842|GO:0016567
Seca9g00625 1058 SUPERFAMILY RING/U-box 952 1031 - -
Seca9g00625 1058 Pfam U-box domain 960 1031 IPR003613 GO:0004842|GO:0016567
Seca9g00625 1058 CDD RING-Ubox_UBE4A 962 1030 - -
Seca9g00625 1058 Coils Coil 756 776 - -
Seca9g00625 1058 MobiDBLite consensus disorder prediction 426 462 - -
Seca9g00625 1058 Pfam Ubiquitin elongating factor core 262 942 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00625 Seca-Chr9 12801504 12811270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00625 1 1058 U-box Gene Family AT5G15400 74.859 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00625 K10597 - gmx:100806175 1835.08