LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g00609	ATGGGTTGCATTAGCTCCAAACATGTGGTTGCCGGAGCTTCTTCTCCGTCGCCGGCCGTCGGTGACATTTTGGAGGCTCTTCCTGCTTCCAATGGCCGTTCTGGGTTGCAGGTTTTGGAATCCAAAACATCGTCAGAGGACAATAGGAACAAGTTGAAGAAAAACAGTTCAAAAAAAAGCAATGGCTCTTTCAGCTTCAGGATTGGGTTCAACAATAGGTATGTGGATGCTGAACAGAACGCCGCTGGTTGGCCTCCTTGGCTCACAGCTGCAGCAGCAGAAGCTGTTCAAGGATGGATTCCCCTCAAAGCTGATGCTTTTCAGAAGTTAGATAAGATTGGACAAGGTACTTATAGCAGTGTGTTCCGAGCACGTGAAGTGGAAACTGGGAGGATGTTTGCTCTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTCCGGAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGACTATCAAATAGTATATACCTTGTTTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCGCGTCCTGACATTGTGTTCACTGATGCACAGATTAAATGTTACATGAGGCAGCTTTTAAGTGGACTTGAGCATTGTCATGTCCGTGGTATTATGCATCGAGACATTAAAGTATCAAATATCTTATTAAACAATGAAGGGATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAACAAGCATCAATTAACAAGCCGTGTAGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCAGTGGATCTGTGGAGTGTTGGCTGTGTATTTGCAGAACTTTTTCTGGGGAAACCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATCTTTAAGCTGTGTGGTTCTCCACCTGATGAGTTCTGGAAAAAATACAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTACTTATGAAAGCTCTCTTCAGGAGAGGTGTGCGGATTTTCCTGAGACTGCTGTAAACCTACTTGAGACTTTACTTTCCATTGACCCTAGTAAGCGTGGGACTGCCTCCTCTGCTCTAATATCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCTAAAAATCGGGATGATGCATCCAGGAAAAAGACTGGAGGTAAAACGCGAGAAGTTGTAACATCAAGAAGGCAGCAAAGACGAATCCGTAAAGGTTTGCAAGAACCAAATGATTTTGGTAAAGCAACTTCAAAAGAGAATATTTCTCAAAATGCTCGTAGAGATGATGGTAAAGCACATCATCCAAAGGGAAAAGGAGGAGCTATGCACAAAGAGCAACCAAAGTCTGCATTGGATACTATGTCAGAGGCTTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTACCCATACATGTCCAAGGATCTAATGATTTTACATGGTCTAAAAGGAGAAAACCAGATGCATCATCAACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAAGGCACATATGATTTAACCACACAAAGGGTATCTATGGATTTTGATCCCAAAGAACTGATAAATGCACAGGCCCAAAGAGAAGAACGAGGTGCACATTGGAATGAAAATGGTATGCGGCGTCCAATTCGTAAATCAAGATTTGGAAGAGACATGTGA	1809	0.424	MGCISSKHVVAGASSPSPAVGDILEALPASNGRSGLQVLESKTSSEDNRNKLKKNSSKKSNGSFSFRIGFNNRYVDAEQNAAGWPPWLTAAAAEAVQGWIPLKADAFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFTDAQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGILKIGDFGLANTISTNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKYKLPHATMFKPQTTYESSLQERCADFPETAVNLLETLLSIDPSKRGTASSALISEYFSTKPYACNPSSLPKYPPSKEMDAKNRDDASRKKTGGKTREVVTSRRQQRRIRKGLQEPNDFGKATSKENISQNARRDDGKAHHPKGKGGAMHKEQPKSALDTMSEASQMNVANGNGYSVPIHVQGSNDFTWSKRRKPDASSTLSDGSRSKISALDPNFAKGTYDLTTQRVSMDFDPKELINAQAQREERGAHWNENGMRRPIRKSRFGRDM.	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g00609	602	MobiDBLite	consensus disorder prediction	34	60	-	-
	Seca9g00609	602	FunFam	probable serine/threonine-protein kinase At1g54610	190	431	-	-
	Seca9g00609	602	Gene3D	Phosphorylase Kinase; domain 1	94	189	-	-
	Seca9g00609	602	Pfam	Protein kinase domain	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g00609	602	Gene3D	Transferase(Phosphotransferase) domain 1	190	431	-	-
	Seca9g00609	602	MobiDBLite	consensus disorder prediction	576	602	-	-
	Seca9g00609	602	MobiDBLite	consensus disorder prediction	410	448	-	-
	Seca9g00609	602	FunFam	probable serine/threonine-protein kinase At1g54610	94	189	-	-
	Seca9g00609	602	MobiDBLite	consensus disorder prediction	399	491	-	-
	Seca9g00609	602	ProSiteProfiles	Protein kinase domain profile.	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g00609	602	MobiDBLite	consensus disorder prediction	461	485	-	-
	Seca9g00609	602	CDD	STKc_CDK9_like	107	391	-	-
	Seca9g00609	602	MobiDBLite	consensus disorder prediction	519	540	-	-
	Seca9g00609	602	PANTHER	CELL DIVISION PROTEIN KINASE	105	395	-	-
	Seca9g00609	602	SUPERFAMILY	Protein kinase-like (PK-like)	102	396	IPR011009	-
	Seca9g00609	602	SMART	serkin_6	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g00609	602	ProSitePatterns	Protein kinases ATP-binding region signature.	113	136	IPR017441	GO:0005524
	Seca9g00609	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g00609	Seca-Chr9	12660409	12666765	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g00609	99	431	Core Cell Cycle Gene Families	AT5G10270	47.278	1.72e-109	336

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca9g00609		Pkinase	5.1e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g00609	-		-	gmx:100790917	946.421