Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00607 ATGGATGGATCAACTGGCCGTGGTGGTGGAAGTGTAGACATGTTTCTATCAAATTATAAGTTGGGAAAAACACTAGGACATGGGTCTTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATCCTCAACCGCCGCAAGATAAAGGACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTCAAGATTGTTCATGCATCCTCACATTGTAAGACTTTATGAGGTCCTAGAAACCCCAAAAGACATATATATGGTGATGGAGTATATGGAATATGGAGAGCTCTTTTATTACATAGTACAAAAGGGTAGGTTGCAAGAAGATGAAGCCCGCAATTTTTTCCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTGGTTCACAGAGACCTGAAGCCTGAGAATTTGCTTTTGGACTCAAAATGCAGTGTCAAGATAGCGGATTTTGGCTTGAGCAACATCATGTGTGATGGTCACTTTCTCAAGACAAATTGTGGAAGTACTAACTATGCAGCTCCAGAGGTTATCTCTAAGAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATACGCTCTTCTATGTGGCACTCTTCCTTTTGATGATGAAAACATTTCCAACCTCCACAAGAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATCTATCACCTGGTGCCAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCAATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCGTCTGCCGCGTTATTTAGCAGTGCCACCACCAGATACAATCCAACAAACCAAAAAGATTGACGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGCAACAGGATACAAAATGAGGGTACTGTAACATACTATTTATTATTCGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGTTTCAACCGTATCCATTCCAGCGAAGTTGCTTCTCCATTTGTTGGGCACCGCATTTCAGGGTATATGGATTATCAAGGGGGAGGAATAAGGCAACAGTTCCCTGTTGAAAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGACAGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGTTGGAAAAAGATTGGACACTATAACATGAAGTGCAAATGGGTTGCTGGCATCCCTGGTCATCATGAAGGAAATTCCAGCATTATTGAGAATGAAGCTGTTAATTCTAAGTCTAATGTAGTCAAATTTGAAGCGCAGCTTTACAAAACTCGTGAGGATAAGTATCTGCTCGATCTTCAAAGGGTCCAGGGCCCACTGTTTCTTTTCTTGGATCTTTGTGCTGCTTTTCTTGCGCAACTTCGTATTTTAAAAATGGATGGATCAACTGGCCGTGGTGGTGGAAGTGTAGACATGTTTCTACGAAATTATAAGTTGGGAAAAACACTGGGAATTGGGTCCTTTGGCAAGGTGAAAATTGCAGAGCATATTGCAGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCAGAGGGTGGGATATATACTCTTCCTAGTCATCTATCACCTGGTGCCAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCAATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCGTCTGCCGCGTTATTTAGCAGTGCCACCACCAGATACAATCCAACAAACCAAAAAGATTGACGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGCAACAGGATACAAAATGAGGGTACTGTAACATACTATTTATTATTCGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGTTTCAACCGTATCCATTCCAGCGAAGTTGCTTCTCCATTTGTTGGGCACCGCATTTCAGGGTATATGGATTATCAAGGGGGAGGAATAAGGCAACAGTTCCCTGTTGAAAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGACAGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGTTGGAAAAAGATTGGACACTATAACATGAAGTGCAAATGGGTTGCTGGCATCCCTGGTCATCATGAAGGAATGATTAACAATTCTGTGAATAATCATCATTACCTTGGAAATTCCAGCATTATTGAGAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGTGAGGATAAGTATCTGCTCGATCTTCAAAGGGTCCACGGCCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTGCGCAGCTTCGTGTTCTCTAG 2559 0.4216 MDGSTGRGGGSVDMFLSNYKLGKTLGHGSFGKVKIAEHVLTGHKVAIKILNRRKIKDMEMEEKVRREIKISRLFMHPHIVRLYEVLETPKDIYMVMEYMEYGELFYYIVQKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCSVKIADFGLSNIMCDGHFLKTNCGSTNYAAPEVISKKLYAGPEVDVWSCGVILYALLCGTLPFDDENISNLHKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPDTIQQTKKIDEEILQEVVNMGFDRNQLVESLGNRIQNEGTVTYYLLFDNRFRVSSGYLGAEFQETMDSGFNRIHSSEVASPFVGHRISGYMDYQGGGIRQQFPVERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCKWVAGIPGHHEGNSSIIENEAVNSKSNVVKFEAQLYKTREDKYLLDLQRVQGPLFLFLDLCAAFLAQLRILKMDGSTGRGGGSVDMFLRNYKLGKTLGIGSFGKVKIAEHIADFGLSNIMRDGHFLKTSCGSPNYAAPEGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPDTIQQTKKIDEEILQEVVNMGFDRNQLVESLGNRIQNEGTVTYYLLFDNRFRVSSGYLGAEFQETMDSGFNRIHSSEVASPFVGHRISGYMDYQGGGIRQQFPVERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCKWVAGIPGHHEGMINNSVNNHHYLGNSSIIENEAVSKSNVVKFEVQLYKTREDKYLLDLQRVHGPQFLFLDLCAAFLAQLRVL. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00607 852 SUPERFAMILY Protein kinase-like (PK-like) 516 629 IPR011009 -
Seca9g00607 852 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00607 852 FunFam Non-specific serine/threonine protein kinase 9 100 - -
Seca9g00607 852 Pfam UBA/TS-N domain 632 668 IPR015940 -
Seca9g00607 852 Pfam UBA/TS-N domain 293 329 IPR015940 -
Seca9g00607 852 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00607 852 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 452 500 IPR001772 -
Seca9g00607 852 CDD STKc_AMPK_alpha 16 271 - -
Seca9g00607 852 Pfam Kinase associated domain 1 458 499 IPR001772 -
Seca9g00607 852 Pfam Kinase associated domain 1 809 851 IPR001772 -
Seca9g00607 852 SMART uba_6 633 670 IPR015940 -
Seca9g00607 852 SMART uba_6 294 331 IPR015940 -
Seca9g00607 852 FunFam Non-specific serine/threonine protein kinase 734 850 - -
Seca9g00607 852 Gene3D Transferase(Phosphotransferase) domain 1 556 631 - -
Seca9g00607 852 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 803 851 IPR001772 -
Seca9g00607 852 Gene3D Kinase associated domain 1, KA1 734 850 - -
Seca9g00607 852 FunFam Non-specific serine/threonine protein kinase 395 499 - -
Seca9g00607 852 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00607 852 CDD AMPKA_C 728 849 - -
Seca9g00607 852 SUPERFAMILY KA1-like 667 851 IPR028375 -
Seca9g00607 852 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Seca9g00607 852 PANTHER SERINE/THREONINE KINASE 572 675 - -
Seca9g00607 852 CDD UBA_SnRK1_plant 632 672 - -
Seca9g00607 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Seca9g00607 852 CDD UBA_SnRK1_plant 293 333 - -
Seca9g00607 852 SUPERFAMILY Protein kinase-like (PK-like) 15 272 IPR011009 -
Seca9g00607 852 Gene3D Kinase associated domain 1, KA1 395 499 - -
Seca9g00607 852 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 631 671 IPR015940 -
Seca9g00607 852 CDD AMPKA_C 389 498 - -
Seca9g00607 852 Gene3D Transferase(Phosphotransferase) domain 1 10 349 - -
Seca9g00607 852 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Seca9g00607 852 SUPERFAMILY KA1-like 328 500 IPR028375 -
Seca9g00607 852 Gene3D - 632 671 - -
Seca9g00607 852 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00607 Seca-Chr9 12632300 12657072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00607 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 51.575 1.88e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca9g00607 Pkinase 5.5e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00607 K07198 - gmx:547544 889.026