Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00606 ATGTTAAAAATGAATGGATCAACTGGCCGTAGTGATGGTGATGAAAGTGTGGACATGTTTCTACAGAATTATAAGTTAAGAAAAACACTTGGAGTTGGGGCCTTTGGTAGGATGATACTTGCAGAGCATGTATTGAATGGGGATAAAGTTGCCATAAAGATCTTTCACCGCTGCAAGATGGAGAACATGAGCATGGAAGAACAAGTGAGAAGAAAAATAAATAATTTAAGAATGTTAACACATCCTCATATTATACGAGTTAATGAGGTGTTAGAAAACCCAAAAGAGGTATATGTTGTTATGGAGTATGCAGAATCTGGAGAGCTCTTTGACTATGTAGTACAAAAGGGTAGGTTGCAAGAAGATGAAGCACGCAAGTTTTTTCAACAGATCATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCTTGAGAATTTGTTATTGGACTCAAAATACAATGTCAAGATTGCTGGTTTTGGCTTGAGCAATATCATACGTGATGGTTACTTTCTTAAGACAAGTTGTGGAAGCCCTGCCTATGCAGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGGGCTGTGGTGTAATTTTATACTCTCTGCTCTGTGGCACCCTTCCTTTTGATGACGAAAACATTCCCAACCTCTTCAAAAAAATTAAGGGAGGGATATACACTCTTCCTAGTGATCTATCACATGGTGCTAGAGATTTGATATCAAGGATGCTTGTGGTGGATCCTATGAAGAGGATGACCATACCTGAGATACGCCAACACACATGGTTCCAAGTTTCTCTGCCGCGTTATTTAGCATTGCCACTGCCAGATCATATAATGCAACAAGCTAAACAGTGGAAGCTGTGGCTCGACAATATAGGTTGCAAAAATGTCTTGTTTTGCCTATTGTTGGGACTGAGTTCATTGCTGCCATCAAAGCTTGTAAAATGTTGCTTTGGATGTTTGGATGAAGAATTTAATGCATCAGCTTGGGTTTGCTCAAATGAGGATGCTAAGTTGCTAGAGTTTGATAAGGTTCACAGTGATGACAATGATTCAGATATATTGACAAAGCCTCTACCCAAAGGAAGTTAA 1134 0.3995 MLKMNGSTGRSDGDESVDMFLQNYKLRKTLGVGAFGRMILAEHVLNGDKVAIKIFHRCKMENMSMEEQVRRKINNLRMLTHPHIIRVNEVLENPKEVYVVMEYAESGELFDYVVQKGRLQEDEARKFFQQIISGVEYCHRNMVVHRDLKLENLLLDSKYNVKIAGFGLSNIIRDGYFLKTSCGSPAYAAPEVISGKLYAGPEVDVWGCGVILYSLLCGTLPFDDENIPNLFKKIKGGIYTLPSDLSHGARDLISRMLVVDPMKRMTIPEIRQHTWFQVSLPRYLALPLPDHIMQQAKQWKLWLDNIGCKNVLFCLLLGLSSLLPSKLVKCCFGCLDEEFNASAWVCSNEDAKLLEFDKVHSDDNDSDILTKPLPKGS. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00606 377 Pfam Protein kinase domain 24 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00606 377 ProSiteProfiles Protein kinase domain profile. 24 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00606 377 FunFam Non-specific serine/threonine protein kinase 105 288 - -
Seca9g00606 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Seca9g00606 377 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 22 280 - -
Seca9g00606 377 Gene3D Transferase(Phosphotransferase) domain 1 14 302 - -
Seca9g00606 377 SMART serkin_6 24 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00606 377 SUPERFAMILY Protein kinase-like (PK-like) 20 293 IPR011009 -
Seca9g00606 377 CDD STKc_AMPK_alpha 23 276 - -
Seca9g00606 377 FunFam Non-specific serine/threonine protein kinase 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00606 Seca-Chr9 12622927 12625886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00606 24 291 CBL-interacting serine-threonine protein kinases AT4G24400 45.725 1.25e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Seca9g00606 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00606 K07198 - pop:7480582 467.618