Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00600 ATGGCAGCGTTAGTATTGACTGTGTCACAAGACGGAACCGGACAGTACCGGACGGTTCAGGAAGCCATTGATGCAGTGCCACTCGGCAACACTCGCCGGACGGTGATTCGGGTGTCGCCGGGAATCTACAGGCAGCCACTGTACGTGGCCAAGACCAAGAACTTCATCACCCTCGTTGGTGTGCGCCCTGAGGACACTGTTCTTACATGGAACAACACTGCCACCAAAATCGATCACCACCAGGATGCTCGGGTGATAGGGACTGGCACTTTTGGTTGTGGCAGCACCATTGTGGAAGGAGGGGACTTTATTGCTGAGAATATTACGTTTGAGAATTCTTCCCCTGAGGGTTCAGGGCAAGCAGTGGCTGTTAGAGTAACAGCAGATCGATGTGCATTCTATAATTGCAGATTCCTTGGATGGCAGGACACATTGTATTTACATTATGGTAAACAATATCTGAAAGATTGTTATATTGAAGGAAGTGTGGACTTTATTTTTGGTAATAGCACTGTGCTCTTGGAGCATTGTCACATCCACTGCAAGTCTGCAGGGTACATAACTGCACAGAGCAGAAAATCTCCACAGGAAACAACTGGTTATGTATTTCTGAGATGTGTCATCACAGGTAATGGAGGAACATCATATACATATCTAGGAAGGCCATGGGGACCTTTTGGAAGAGTGGTCTTTGCATTCACTTACATGGATCAATGTATAAAGCCTGCTGGCTGGAACAATTGGGGGAAAACTGAGAATGAAAAAACTGCTTGTTTCTATGAATACAGGTGTTTTGGACCGGGTTGGTGTCCATCCAAACGAGTGAAATGGGCTAAAGAATTAGCGGATAAAGAAGCAGAGCAGTTTCTCATGCATCGTTTCATTGATCCACAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGCCTCAAGGATTCCTCTTTCTGCTTAG 951 0.4616 MAALVLTVSQDGTGQYRTVQEAIDAVPLGNTRRTVIRVSPGIYRQPLYVAKTKNFITLVGVRPEDTVLTWNNTATKIDHHQDARVIGTGTFGCGSTIVEGGDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTVLLEHCHIHCKSAGYITAQSRKSPQETTGYVFLRCVITGNGGTSYTYLGRPWGPFGRVVFAFTYMDQCIKPAGWNNWGKTENEKTACFYEYRCFGPGWCPSKRVKWAKELADKEAEQFLMHRFIDPQSERPWLAQRMASRIPLSA. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00600 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 304 - -
Seca9g00600 316 Gene3D - 3 310 IPR012334 -
Seca9g00600 316 FunFam Pectinesterase 2 309 - -
Seca9g00600 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
Seca9g00600 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Seca9g00600 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00600 Seca-Chr9 12505217 12514751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00600 5 309 Carbohydrate Esterase AT5G47500 37.580 2.84e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00600 K01051 - gmx:100810259 612.453