Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00593 ATGGGACGATCACCATGCTGTGACAAGGTTGGCTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTCAAAGGTGTGGGAAGAGTTGTAGACTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAATTCAGTTTGCAAGAAGAACAAACCATTATTCAACTTCATGCCCTCTTAGGGAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGGACGGATAATGAGATCAAAAACTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGGATTGATCCAGTGACTCACAAGCCCAAAAACGACGCCCTTCTCTCTAGTGACGGCCAATCTAAAACCGCTGCAAATCTCAGCCACATGGCACAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTTAGGGAATCAAAACTGCGTTCACATCATCAACATCATGTGTTTCCATCTTCATCTTCATCTTCTCTCAACAACAAACAAGACTCAACACCACCACCACAACCTTTGCCTTCTTCTTCATCATCACATTCCCTTGATGTGCTCAAGGTTTGGAATAATGGAGGATGGTTGAAACCCAACAATGAAGGAAATGGTGGCATTGGTAGCATTAGTGGGGACCTTGAGTCACCTACTTCTACTCTATCTTTCTCTGAGAATGTGCCACCAATTATGACTATTGGAGGAGGAGAAAATAATGATAATAATAATAATGTGTTGCCTATGATTGAGTTTGTGGGAACTTCAGGTTCTTGTGAAGGAGCTGTGAAAGAAGAAGGTGATCAGTGGAAAGGTTATGAAAGTTCAATGACTTCTTTTGCGTCTGGTTTACAATATGAATTGACAATGTCCATGGAAGGCACATGGGCTTCTGAGTCTCTTAGGACTAATGGTGGTTCTAATTCACATGGAGGAGTTGTTGGTGATGCCATTGTTGAGGAAGGTTTCACCAATCTTTTGCTTAAAATAAATTCCGATGATCGGAGCTTGTCGGAGGGCGGAGGAGAATCTAACCATGGTGATGATGGCGGTGGCGGTGACAATGGTGGTGGCGGTGATTTCTATGAAGATAACAATAACTACTGGAATAGCATTCTTAATTTAATGAATTCTTCCCCTTCTGAGACCACAATGTTTTGA 1227 0.4279 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHHQHHVFPSSSSSSLNNKQDSTPPPQPLPSSSSSHSLDVLKVWNNGGWLKPNNEGNGGIGSISGDLESPTSTLSFSENVPPIMTIGGGENNDNNNNVLPMIEFVGTSGSCEGAVKEEGDQWKGYESSMTSFASGLQYELTMSMEGTWASESLRTNGGSNSHGGVVGDAIVEEGFTNLLLKINSDDRSLSEGGGESNHGDDGGGGDNGGGGDFYEDNNNYWNSILNLMNSSPSETTMF. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00593 408 CDD SANT 69 112 IPR001005 -
Seca9g00593 408 MobiDBLite consensus disorder prediction 356 383 - -
Seca9g00593 408 MobiDBLite consensus disorder prediction 132 147 - -
Seca9g00593 408 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca9g00593 408 MobiDBLite consensus disorder prediction 227 249 - -
Seca9g00593 408 CDD SANT 16 61 IPR001005 -
Seca9g00593 408 MobiDBLite consensus disorder prediction 167 206 - -
Seca9g00593 408 MobiDBLite consensus disorder prediction 221 249 - -
Seca9g00593 408 FunFam MYB transcription factor 69 116 - -
Seca9g00593 408 SMART sant 66 114 IPR001005 -
Seca9g00593 408 SMART sant 13 63 IPR001005 -
Seca9g00593 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca9g00593 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 194 - -
Seca9g00593 408 MobiDBLite consensus disorder prediction 119 147 - -
Seca9g00593 408 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca9g00593 408 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca9g00593 408 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca9g00593 408 MobiDBLite consensus disorder prediction 176 192 - -
Seca9g00593 408 Gene3D - 69 116 - -
Seca9g00593 408 Gene3D - 13 66 - -
Seca9g00593 408 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca9g00593 408 FunFam MYB-related transcription factor 13 66 - -
Seca9g00593 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00593 Seca-Chr9 12348478 12351315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00593 336 408 MYB Transcription Factor Family AT3G01140 45.946 2.29e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00593 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00593 K09422 - gmx:100101835 555.444