Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00591 ATGGAAGCAATGAAGAACAGTTCCAGAGCTATGGAGGGAGATAAGAAGTTTGAATTGCCACCAGGTTTCAGGTTTCATCCAACAGATGAAGAACTCATAACTCACTACCTCTCACAGAAGGTTCTTGACAGCAGCTTCTGTGCTAGAGCCATTGCTGATGTTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGGTTGTCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTTTGAGGGACAGAAAGTACCCAACTGGATTAAGGACAAACAGGGCCACTAATGCTGGTTACTGGAAGGCCACAGGCAAAGACAGAGAGATATACAGAGCAAGGACATTGATTGGAATGAAGAAAACTCTGGTTTTTTACAAAGGAAGAGCTCCGAAAGGTGGAAAAACAAACTGGGTCATGCATGAATACAGATTGGAGGATAACCATTCTATTCATAATCCACACAGAATTGCAATGAATGATTGGGCTATCTGCAGAGTTTTTGAGAAAGGTTCTTGTGGAAAGAAGATGCATGTCCCTGATTTGGTAAGGTTCAGCTCTCTTATCAAGGAACTGCCTCCATTGATGAATACTTCTCCATACAACAGTGAAACAAAAACTGGTGCTGGGGAGTCATCACATGTGACCTGTTTCTCTGATCCAAATCAAAGTGATGATAGGAGAACACAAGATGACATAGTTGATAGCTTTGAAACTCCTATCTTGGCAGCATCATCATATTCTCCAAATCCAAACCCCTCTGATATTTCCCCTGCCTCATGGACTTTTACCAAAGCTGCCCCTACTGTGCCCCACCAAGCCACACAAATTGCACAAGTTGGGAATTCACAATGCTCAGATTATTTTGTGGTTCAAGAACAGTCCATGATGAGGATGTTGATTGAAAACCATGGAACAAGTACAAAGCAAAAAAATCAGAAAGCTCAGGAAAAGGACTTTAATGCTGACATCTCCCCTGTGATGTACAACAATGAAATGTTTCAAAGATCGTTTGGGGATCAGGAATTTTCATCAGCTTCAATAGGACATGGCTGCTTATGGAATATCTAA 1068 0.4148 MEAMKNSSRAMEGDKKFELPPGFRFHPTDEELITHYLSQKVLDSSFCARAIADVDLNKCEPWDLPWLSKMGEKEWYFFCLRDRKYPTGLRTNRATNAGYWKATGKDREIYRARTLIGMKKTLVFYKGRAPKGGKTNWVMHEYRLEDNHSIHNPHRIAMNDWAICRVFEKGSCGKKMHVPDLVRFSSLIKELPPLMNTSPYNSETKTGAGESSHVTCFSDPNQSDDRRTQDDIVDSFETPILAASSYSPNPNPSDISPASWTFTKAAPTVPHQATQIAQVGNSQCSDYFVVQEQSMMRMLIENHGTSTKQKNQKAQEKDFNADISPVMYNNEMFQRSFGDQEFSSASIGHGCLWNI. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00591 355 FunFam NAC domain-containing protein 100-like 28 173 - -
Seca9g00591 355 MobiDBLite consensus disorder prediction 196 228 - -
Seca9g00591 355 MobiDBLite consensus disorder prediction 196 222 - -
Seca9g00591 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 305 - -
Seca9g00591 355 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Seca9g00591 355 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Seca9g00591 355 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Seca9g00591 355 SUPERFAMILY NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00591 Seca-Chr9 12319021 12321006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00591 18 348 NAC Transcription Factor Family AT5G07680 51.497 8.48e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g00591 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00591 - - gmx:100781383 502.286