Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00584 ATGTCTTCTGCCTCAATCCAGCAACAGTTCCGATACACTCAAACCCCATCGAAGGTGCTGCACTTCTGCATCCTTCCATGGGTGTGCACCGATGATGAACTCATAGACCTCTGTAGCCCCTTCGGCAAGGTCGTCAAAACCAAGGACTACACAAATCCGATGCTTCCTGTTAATCAGACTGCTATTGCTGGGGCATTACAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCTCTAATTCAATACCCTGATGTCACAATAGCAACAACTGCCAAAGAAGCTTTGGAGGGACATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATACTCTCGTCATACTGATCTCAATGTAAAGACTGTGATGGTGAACTCAGTTGTTGACAATAATGCAAAAGAAACTGTGATGGTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGATGGTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGATAGTGAACTCATTCGTGGACAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGTGCTGCTAAGAAGACCACTACAACAGAACAAAAGAGGCAAAACAGTGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTTTACATGAAGGCTCAAACCGTAAGCACATCCAAGAAGACGAGCAAGTCTTCTATAAGCTTGATGATAGAAATGATGGAAGTGCAGCTGCAATGGGAATGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCGAAAAGAAATGTCTGGGTGGGCCTTTGAAAGACATGCAAACAGTGATCACAGAAAACCCTACAAACGTATTTACATCCTCCAAACACAAGAAAATCTCCAAGATTGCCTCATTGTTGTCTGGCTTCATTCAAATGAAAGAGAATGCCGTGAAGAATTCTGCTTTTCAATATTGCCCGTGGAGACCCTGTGGAGTGTTGGAAAGCAGAATTCTTCACGGGCATTGTTGAAAAGCAGATTCTTCACGGCGTTCTCTTTCAGTTGA 1047 0.4269 MSSASIQQQFRYTQTPSKVLHFCILPWVCTDDELIDLCSPFGKVVKTKDYTNPMLPVNQTAIAGALQKIAIFEKNGQTQALIQYPDVTIATTAKEALEGHCIYDGGYCKLHLTYSRHTDLNVKTVMVNSVVDNNAKETVMVNSVVDNIARETVMVNSVVDNIARETVIVNSFVDNIPRHCKGRRSRAAKKTTTTEQKRQNSEVGQTSTIEIDPPLHEGSNRKHIQEDEQVFYKLDDRNDGSAAAMGMRGRITRGGILCSCCRKEMSGWAFERHANSDHRKPYKRIYILQTQENLQDCLIVVWLHSNERECREEFCFSILPVETLWSVGKQNSSRALLKSRFFTAFSFS. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00584 348 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 64 128 - -
Seca9g00584 348 MobiDBLite consensus disorder prediction 181 222 - -
Seca9g00584 348 SUPERFAMILY RNA-binding domain, RBD 6 122 IPR035979 GO:0003676
Seca9g00584 348 Gene3D - 61 137 IPR012677 -
Seca9g00584 348 Pfam Tify domain binding domain 249 298 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00584 Seca-Chr9 12161132 12164362 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00584 224 302 PHD Transcription Factor Family AT4G14920 37.975 5.71e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00584 K14948 - gmx:100792308 122.094