Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00567 ATGTTGACTGACCTCTATTTATTCCACCTCCAATTCACCCTCCATTTCCCCAAACAACTCATTTCAAGGAAAATGGCTCATCTTGGCTTTCTTTTTCTGGGATTTATCTCCATGATATCATGTGTTAATGGTTATGGGAGCAGTGGTTGGACTAATGCACATGCCACCTTCTATGGTGGCAGTGATGCTTCTGGAACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGCTGTGGAGCATGCTTTGAAATTAAATGTGTAAATGACCCACAATGGTGCCTCCCTGGCTCTATTGTAGTCACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGCTTACAGAAGGGTAAGCTGCAGAAGAAGAGGTGGAATCAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTGCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCAATCAAAGGTTCAAGAACTAGATGGCAAAGCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTGAATGGACAGAGTCTTTCCTTTTTAGTCACCACTGGTAACGGTCATAGTGTGGTCTCTTACAATGTTGCCCCAGCTAGTTGGTCCTTTGGACAGACCTACACTGGAAGACAGTTCCGCTACTAA 801 0.4469 MLTDLYLFHLQFTLHFPKQLISRKMAHLGFLFLGFISMISCVNGYGSSGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVAYRRVSCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQSMSRNWGQNWQSNSYLNGQSLSFLVTTGNGHSVVSYNVAPASWSFGQTYTGRQFRY. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00567 266 PANTHER EXPANSIN-A15 38 264 IPR002963 GO:0009664
Seca9g00567 266 SUPERFAMILY Barwin-like endoglucanases 49 190 IPR036908 -
Seca9g00567 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 172 IPR007112 -
Seca9g00567 266 Gene3D - 39 168 IPR036908 -
Seca9g00567 266 CDD DPBB_EXPA_N 49 167 - -
Seca9g00567 266 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 119 129 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Seca9g00567 266 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Seca9g00567 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Seca9g00567 266 Gene3D - 172 264 IPR036749 -
Seca9g00567 266 FunFam Expansin 39 168 - -
Seca9g00567 266 Pfam Lytic transglycolase 85 162 IPR009009 -
Seca9g00567 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 261 IPR007117 -
Seca9g00567 266 FunFam Expansin 172 264 - -
Seca9g00567 266 SMART dpbb_1 85 162 IPR007112 -
Seca9g00567 266 SUPERFAMILY PHL pollen allergen 169 261 IPR036749 -
Seca9g00567 266 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Seca9g00567 266 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Seca9g00567 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Seca9g00567 266 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Seca9g00567 266 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Seca9g00567 266 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00567 Seca-Chr9 11846343 11847927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00567 24 265 Expansin Gene Family AT2G03090 79.200 7.60e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00567 K20628 - gmx:100791784 494.197