Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00556 ATGGAGATAATAACCAGCGCCAACACCAACAACAACAACACAGCAAAATCACCCGAACCCGAAACCGAGACACCGACCCGGATCCAACAACAACCCATCAACACAAACACAAAGCCGTTGTCTTTCTCTAACGGGGTACTGAAACGCCACCACCCTACTCATCACCACACTCACACTCACCAACACAACACCACCACAAACCAAGCGGTGGTTGTTACTTACAAAGAATGCTTGAAGAACCACGTGGCAAGCTTAGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTCATGCCTTCACCCAACGCAAACGAAAACGACCCTAGTTCCATCAAATGCGCCGCCTGTGGCTGTCACCGGAACTTCCACCGCCGGGAACCAGAGGAACCTATAGCGGCGACTCATGTTTTTGAGTACCAGCCTCACCACCGCCACCACCCTCCTCCTCCTCCGCCGTTTCAGAATCGGAGCCCTAATTCGGCGTCTCCGCCGCCGATCTCGTCTTACCCCTCGGCGCCTCACATGCTTCTCGCGCTTTCCGGTGGAGGACTCTCTGTCCCGCCGGAAAACACCGCCGCGCCGACGAATTTGTCCTCGCCGCTGGGAGGGACCAACTCGAGGAAGAGGTTCAGGACCAAGTTCACGCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCGGAGAGAGTTGGGTGGAAGATGCAGAAGAGGGATGAAGAATTGGTAATGGAGTTCTGCAATGAGGTTGGTGTTGACAGAGGAGTGCTCAAGGTTTGGATGCACAACAACAAGAACACTTTTGGGAAGAGAGATCATGTGAATGCTAACGGCGCCACCGGAGGAGGTGGCGCCGTCGCCGTCGCCAGCGGTGGTGAACGTAACCCCAACGACAATCACAACCACCACAACAACAACAACAACATCGCTTCACAGGATCAGAATCAGTATGAGAATGATAGCGGGACTAACGTTGCTACTAATGGGTCTTCTTCTTCTTCTTGA 996 0.5422 MEIITSANTNNNNTAKSPEPETETPTRIQQQPINTNTKPLSFSNGVLKRHHPTHHHTHTHQHNTTTNQAVVVTYKECLKNHVASLGGHALDGCGEFMPSPNANENDPSSIKCAACGCHRNFHRREPEEPIAATHVFEYQPHHRHHPPPPPPFQNRSPNSASPPPISSYPSAPHMLLALSGGGLSVPPENTAAPTNLSSPLGGTNSRKRFRTKFTQEQKEKMHEFAERVGWKMQKRDEELVMEFCNEVGVDRGVLKVWMHNNKNTFGKRDHVNANGATGGGGAVAVASGGERNPNDNHNHHNNNNNIASQDQNQYENDSGTNVATNGSSSSS. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00556 331 MobiDBLite consensus disorder prediction 298 331 - -
Seca9g00556 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 74 125 IPR006456 -
Seca9g00556 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 264 - -
Seca9g00556 331 NCBIfam homeobox domain, ZF-HD class 206 263 IPR006455 -
Seca9g00556 331 Gene3D - 193 266 - -
Seca9g00556 331 FunFam Zinc-finger homeodomain protein 2 194 267 - -
Seca9g00556 331 MobiDBLite consensus disorder prediction 268 331 - -
Seca9g00556 331 MobiDBLite consensus disorder prediction 1 36 - -
Seca9g00556 331 MobiDBLite consensus disorder prediction 188 207 - -
Seca9g00556 331 Pfam ZF-HD protein dimerisation region 72 126 IPR006456 -
Seca9g00556 331 MobiDBLite consensus disorder prediction 145 169 - -
Seca9g00556 331 MobiDBLite consensus disorder prediction 139 207 - -
Seca9g00556 331 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 73 125 IPR006456 -
Seca9g00556 331 SUPERFAMILY Homeodomain-like 195 267 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00556 Seca-Chr9 11617946 11618965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00556 1 262 ZF-HD Transcription Factor Family AT5G15210 52.060 4.77e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca9g00556 ZF-HD_dimer 3.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00556 - - lja:Lj5g3v2258260.1 405.216