Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00553 ATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATATTGGTGTCTTATATACAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCCACCAATACTGGGTTGTCAAGGTGTAGTAAGAGCTGCAGACTTAGATGGACTAATTACCTCAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATTATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCTTACCTTCCACAGAGAACAGATAATGACATAAAGAACTATTGGAATACCTATTTGAAGAAGAGGCTGAAGAAATTGGAAACAGGTACTACAGAAGGAAAAGGTAGTAACTTGGGACATGGATTCTCAGTTTCTCAGTCAATGTCTAGAGGTCAGTGGGAAAGAAGGCTCCAAACTGACATCAATATGGCTAAGAGAGCTCTCAGTGAGGCTCTCTCACCAGACAACAACAAGACACCATTGTTACCACCTGAATCAATGAACCTTTCCAGTGATAGCAGTTCCTTTTGTTCCACAAAACCAACACAGTCTTTATGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGCTGAAAGGGTGGATGAAAAATCCACTAAAGGCCTCAAGTGCTGCTAACTCATCTGTGACTCAGAATTCCTTCAATAATAATAACTTGGGGACTGACACTGCTTCAAGTGGGGCAAAGGGAAACAGTGGTGTTGAGTTGTCTGAGACATTTGAATCATTGTTTGGTGGTTATGAGTCTTTGGATTATTCTTCAAATTCTGAGTTTTCTCAATCTCTGTCCCCTGAGGCTACTCTTTTCCAAGATGAGAGCAAGCCAGATACAGCAGAAATGCCATTTTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTGGTTGTCAAGACAAAGCTAGCTGCACTCAAATTACATCTTCTCAAATTGAAGCTATATTTTAG 1005 0.4189 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKRLKKLETGTTEGKGSNLGHGFSVSQSMSRGQWERRLQTDINMAKRALSEALSPDNNKTPLLPPESMNLSSDSSSFCSTKPTQSLCYASSADNIARLLKGWMKNPLKASSAANSSVTQNSFNNNNLGTDTASSGAKGNSGVELSETFESLFGGYESLDYSSNSEFSQSLSPEATLFQDESKPDTAEMPFSLLEKWLLDDAAGCQDKASCTQITSSQIEAIF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00553 334 CDD SANT 69 112 IPR001005 -
Seca9g00553 334 Gene3D - 68 130 - -
Seca9g00553 334 CDD SANT 16 61 IPR001005 -
Seca9g00553 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca9g00553 334 SMART sant 13 63 IPR001005 -
Seca9g00553 334 SMART sant 66 114 IPR001005 -
Seca9g00553 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca9g00553 334 Gene3D - 13 66 - -
Seca9g00553 334 MobiDBLite consensus disorder prediction 233 252 - -
Seca9g00553 334 MobiDBLite consensus disorder prediction 162 187 - -
Seca9g00553 334 MobiDBLite consensus disorder prediction 165 187 - -
Seca9g00553 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca9g00553 334 FunFam MYB-related transcription factor 13 66 - -
Seca9g00553 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Seca9g00553 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca9g00553 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca9g00553 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca9g00553 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00553 Seca-Chr9 11484725 11485996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00553 1 314 MYB Transcription Factor Family AT5G62470 52.422 9.52e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00553 Myb_DNA-binding 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00553 K09422 - gmx:780542 473.396