Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00548 ATGGAGGAGAGGACTGATATGGATAAGGTTGATGATGTGATGCCTGGTTTTCGTTTTCATCCCACAGATGAGGAGCTTGTTGATTTTTACCTCAAGAGAAAAATTCAACACAAGTCTCTTCCTATTGAACTCATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAAGAAGAGCTGGCGGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGATAGAAAATACAGAAACAGTGCAAGGCCAAATAGAGTGACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGATAGGCCTATTTACTCCTCAGAAGGAAAATGCATTGGTTTGAAGAAGTCTCTTGTTTTCTATAGAGGCAGAGCTGCCAAAGGGATGAAAACTGACTGGATGATGCATGAGTTTAGGCTACCTTGTATATCAGACTCAGCTCCTCCCAAAAAATTCTCAGACAAAACCATCCCTCCAACTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTGTCCATGGTACAGAAGGCTTTATCTCACCCTTGGATCTCTCAGTTACCAGGAAACATGGTATCTGATATATTCACACAGAGTGCAAACTGCAACAATCAGTTCTGTTCAGAGAACATCTCTTGCACAACAGAAGTAGTAGGATCATCAGCCATCCAATTTTGTGGTAAAAACCAGGAGCAGCTACATCAAGTCTCTGATGCCAACACCAACACCAACTTCTCAGCTTCAGATATCAATCCCCCTTATAAACCTATCAATAGCAGCAGCACAATTTCCAAGTCCTCACAAATTCCTGTTTCAGATGGAGACCTTGCTGACAACCTCATCTTCTACACACCTGAAGCAACAGGGCCCACCAACCCTGACTATATTGGTTTTGAAGAGCCAAACCAGCAGCAGTATAGTGGCTTCTCAATTAGTCTACCTCAGGATATGCAAGCAAACATTGGAACAGAGATAATAGGAGCAGAAGAACAAGGGTGGAGGAAGAACCAATTGGAAACAGTTGGGAGAACAATTGGATTTCCCTTCAGTTTGCCTCCAAATGATGCTTGGAAGGCTCCTCTGGCATGGGACTCACCCCTTTGCCCCAGTGAAATGTCCACCACTTATTCCACTAATAAATGTTACATTTAA 1164 0.4304 MEERTDMDKVDDVMPGFRFHPTDEELVDFYLKRKIQHKSLPIELIKQVDIYKYDPWDLPKEELAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPPKKFSDKTIPPTDSWAICRIFKKTNSLSMVQKALSHPWISQLPGNMVSDIFTQSANCNNQFCSENISCTTEVVGSSAIQFCGKNQEQLHQVSDANTNTNFSASDINPPYKPINSSSTISKSSQIPVSDGDLADNLIFYTPEATGPTNPDYIGFEEPNQQQYSGFSISLPQDMQANIGTEIIGAEEQGWRKNQLETVGRTIGFPFSLPPNDAWKAPLAWDSPLCPSEMSTTYSTNKCYI. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00548 387 Gene3D NAC domain 22 177 IPR036093 GO:0003677|GO:0006355
Seca9g00548 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 243 - -
Seca9g00548 387 FunFam NAC domain-containing protein 35 22 175 - -
Seca9g00548 387 ProSiteProfiles NAC domain profile. 13 172 IPR003441 GO:0003677|GO:0006355
Seca9g00548 387 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Seca9g00548 387 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00548 Seca-Chr9 11418318 11420883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00548 9 233 NAC Transcription Factor Family AT1G26870 65.502 1.72e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g00548 NAM 9.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00548 - - gmx:100778120 558.14