Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00541 ATGTCTAGCCGAAGGTCCAGGCAACAATCTGGTTCTACAAGAATCTCCGATGACCAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGAGATAGGCGTTCTGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGTAATTACATTAGAAACTTACACAGAGAGGTGGATGATTTAAGTGAACGTTTGTCTCAGTTGTTGGCCACTATTGATGCTGATAGTCCAGAAGCTGCTATCATCAGGAGCCTAATTAACCAATAA 279 0.4229 MSSRRSRQQSGSTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSPEAAIIRSLINQ. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00541 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Seca9g00541 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Seca9g00541 92 FunFam Transcription factor ILI6 5 87 - -
Seca9g00541 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Seca9g00541 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Seca9g00541 92 Coils Coil 55 75 - -
Seca9g00541 92 Gene3D - 3 84 IPR036638 GO:0046983
Seca9g00541 92 CDD bHLH_AtPRE_like 9 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00541 Seca-Chr9 11219841 11221119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00541 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 9.28e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g00541 HLH 6.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00541 - - gmx:100794486 159.844