Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00539 ATGGCAAGCCCTGTTGGTGTTGGTGCTAAGACTGAAGGTAGGAATGTGGGAAAAGATAAAGGTGTCAAAGGTGAAGGTTCATGGTTTTGGATGAATCTCAGGATGTTGTTCGCTTGCATGGGTTTGGGGTCCACAGCGGAACACCGCTCCTTAGGTGACACTAACAACAACAATAAACTGGATAAGGGAAAGAAACCTATAAGAGATAATGGCAAATCCCCATTGTTCCCCTTTTATAAGCTCAAGTTGGCAACTAAGAATTTCAAAGCTGGGAATTTTCTTGGTGAGGGAGGCTTTGGTACTATACAGAAAGGCTGGATCACTCAGAACTATTGCTCCCCATCAAGACCTGGAGTGGGTATTCCAGTTGCAGTAAAGACCCTTAACATAGAAGGAAATCAGGGTCACAAAGAATGGGTGGCTGAAGTGGGAAATCTAGGTGCCCTGGAACACCCCCAACTAGGGGTGGGAACAGGCCAGCCCGCTCGTCAGGGGCCTACTACCCGGCCTATATCAGGCCCAGGCCAGGCCAGGCCAATTTATTAA 546 0.4799 MASPVGVGAKTEGRNVGKDKGVKGEGSWFWMNLRMLFACMGLGSTAEHRSLGDTNNNNKLDKGKKPIRDNGKSPLFPFYKLKLATKNFKAGNFLGEGGFGTIQKGWITQNYCSPSRPGVGIPVAVKTLNIEGNQGHKEWVAEVGNLGALEHPQLGVGTGQPARQGPTTRPISGPGQARPIY. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00539 181 Gene3D Phosphorylase Kinase; domain 1 67 157 - -
Seca9g00539 181 PANTHER OS01G0588500 PROTEIN-RELATED 72 154 - -
Seca9g00539 181 MobiDBLite consensus disorder prediction 157 181 - -
Seca9g00539 181 MobiDBLite consensus disorder prediction 54 69 - -
Seca9g00539 181 SUPERFAMILY Protein kinase-like (PK-like) 70 153 IPR011009 -
Seca9g00539 181 ProSitePatterns Protein kinases ATP-binding region signature. 94 126 IPR017441 GO:0005524
Seca9g00539 181 MobiDBLite consensus disorder prediction 50 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00539 Seca-Chr9 11178772 11179747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00539 54 154 Glycoside Hydrolase AT3G07070 37.624 4.00e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g00539 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00539 - - ccaj:109817012 123.635