Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00538 ATGAGACTGAAAGTTCTGATTGGTGCTGCAAAGGGTCTTGCTTTTGTGCATGAGGAAGCTAAAAAGCCATTGATTTATCAAGACTTCAAAACTTCTAATATCCTATTGGATTCAGACTACAATGCAAAACTTTCTGATTTTGGGCTAGTGAAAGATTCCCTAGCGGGTGACTTGACTCATGTGTCAACTAGAGTGATGGGTACTCAAGGGGCGATTGATAAGAAGAGGCCAGTAGCGGAGCATCACCTGGTGGAATGGGCAAGGCCTCAAATAAAGCGTGGAGGAGGAGCACAATACCACCAATTAATGGATCCAAACCTTGATGGCCACTGCTCAATCAAAGGAACACAAAAGGCAATGAGTTGGGCCTATCAGTGCCTTTCAAGAGATTCGAAATCACGACCACTCATGAGTCAGTTCGTTCAAGGGCTACAATGTGCCTCTCAGTATACTACTGACTTATCCCATGCCTCACCATCTTATCACCCCATCATGAAACAAAAACAAGGTCAAGGTGCCCCTTCCTCTTCTAGCTCCAAATCAGCGTCAGGGAATAATATTGCTGCCAACAAATATGGGCTGAGAATTGGGTCATCGGCAAGGAGCACACCAAGTCGCTTTCAAGCCTCTCCGTTGAGCTTTACCCCTCCTTTTCCTTCACCCAAAGCTGGTTGA 675 0.4563 MRLKVLIGAAKGLAFVHEEAKKPLIYQDFKTSNILLDSDYNAKLSDFGLVKDSLAGDLTHVSTRVMGTQGAIDKKRPVAEHHLVEWARPQIKRGGGAQYHQLMDPNLDGHCSIKGTQKAMSWAYQCLSRDSKSRPLMSQFVQGLQCASQYTTDLSHASPSYHPIMKQKQGQGAPSSSSSKSASGNNIAANKYGLRIGSSARSTPSRFQASPLSFTPPFPSPKAG. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00538 224 PANTHER OS01G0588500 PROTEIN-RELATED 71 146 - -
Seca9g00538 224 Gene3D Transferase(Phosphotransferase) domain 1 74 160 - -
Seca9g00538 224 MobiDBLite consensus disorder prediction 157 186 - -
Seca9g00538 224 SUPERFAMILY Protein kinase-like (PK-like) 2 165 IPR011009 -
Seca9g00538 224 Pfam Protein kinase domain 10 55 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00538 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Seca9g00538 224 MobiDBLite consensus disorder prediction 198 224 - -
Seca9g00538 224 Gene3D Transferase(Phosphotransferase) domain 1 1 73 - -
Seca9g00538 224 MobiDBLite consensus disorder prediction 198 213 - -
Seca9g00538 224 ProSiteProfiles Protein kinase domain profile. 1 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00538 Seca-Chr9 11177211 11178056 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00538 2 144 Glycoside Hydrolase AT3G07070 38.068 1.92e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g00538 Pkinase 2.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00538 - - mtr:25495290 197.978