Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00537 ATGAATGGTATCATCACTACTTCCACCATCATATCCTCTTCTACCATGGCCTTCCCACCTTCACACACCTTCATCTTTCACCATAATGAAGATCACGACCACCTCCGTTCCACTTCAACCTCTCTCAACACCACTTTCCCCTCTTTCCCACCCCAACAACACCACTTTCTTCAAGGGGGTGGTGGTGCAGGAGGTTCTTTCATGATGAAGAGATCGGTGTCGTTTTCAGGCATAGAGAACAACAACAACAACAAATGCGATGAAATGCATGGAGATGATGACTTGTCAGATGATGGGTCCCAGTTAGGAGAGAAGAAGAAGAGGCTCAGTTTGGAACAGGTCAAGGCCCTTGAGAAAAGCTTTGAACTTGGCAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCTAAGGCTTTAGGCCTTCAACCTAGACAGATCGCTATTTGGTTTCAGAACAGGAGAGCAAGGTGGAAAACCAAGCACCTTGAGAAGGAATATGAAGTTCTCAAGAAACAGTTTGAAGCTGTCAAGGCTGATAATGATACCCTTAAAGCTCAGAACCAGAAACTACACGCAGAGTTACAAACACTAAAAAGTAGGGACTGTTGTGAAACTGGAACAATTAGCCTTAAAAAGGAAACTGAGGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGACATTAACTTGGATCTCTCAAGAACACCAGTTATGAACAGTCCTGTTTCTTCTCAGAATGGTATTAAAAGCCTTCTACCCAATTCCCTAAAACCCACCAGCATAACACAGCTCCTTCAATGCTCATCAAGATCAGATCTTCAAGATGAAGGCTTCTGCAACATGTTTCACCACATAGATGAGCAGCAGAATTATTGGCCATGGCCTGAGCAGCACCATTTTCATTGA 906 0.4393 MNGIITTSTIISSSTMAFPPSHTFIFHHNEDHDHLRSTSTSLNTTFPSFPPQQHHFLQGGGGAGGSFMMKRSVSFSGIENNNNNKCDEMHGDDDLSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKHLEKEYEVLKKQFEAVKADNDTLKAQNQKLHAELQTLKSRDCCETGTISLKKETEGSWSNGSDNSSDINLDLSRTPVMNSPVSSQNGIKSLLPNSLKPTSITQLLQCSSRSDLQDEGFCNMFHHIDEQQNYWPWPEQHHFH. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00537 301 MobiDBLite consensus disorder prediction 85 101 - -
Seca9g00537 301 Pfam Homeodomain 105 158 IPR001356 GO:0003677
Seca9g00537 301 SMART HOX_1 103 164 IPR001356 GO:0003677
Seca9g00537 301 PRINTS Lambda-repressor HTH signature 140 156 IPR000047 GO:0003677
Seca9g00537 301 PRINTS Lambda-repressor HTH signature 131 140 IPR000047 GO:0003677
Seca9g00537 301 FunFam Homeobox-leucine zipper protein ATHB-13 97 164 - -
Seca9g00537 301 Gene3D - 97 177 - -
Seca9g00537 301 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Seca9g00537 301 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Seca9g00537 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 293 IPR045224 GO:0003700
Seca9g00537 301 Coils Coil 152 200 - -
Seca9g00537 301 MobiDBLite consensus disorder prediction 80 101 - -
Seca9g00537 301 Pfam Homeobox associated leucine zipper 160 199 IPR003106 GO:0006355|GO:0043565
Seca9g00537 301 SUPERFAMILY Homeodomain-like 95 161 IPR009057 -
Seca9g00537 301 CDD homeodomain 105 161 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00537 Seca-Chr9 11085481 11087930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00537 16 296 Homeobox Transcription Factor Family AT5G15150 50.000 1.19e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g00537 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00537 K09338 - gmx:100790803 433.721