Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00536 ATGAGACTGAAAATTCTGATTGGTGCTGCAAAGGGTCTTGCTTTTTTGCATGAGGAAGCTAAAAAGCCATTGATTTATCGAGACTTCAAAACTTCTAATATCCTGCTGGATTCGGACTACAATGCAAAACTTTCTGATTTTGGGCTGGTGAAAGATGCCCCAACGGGTGACTTGACTCATGTGTCAACTAGAGTGATGGGTACTCAAGGGTATGCAGCCCCTGAGTATGTGATGACAGGGCACTTGAGTTCAAAGAGTGATGTGTATAGCTTTGGAGTGGTATTGCTTGAGATATTGACAGGGAGAAGGACGATTGATAAGAAGAGGCCAGTAGCGGAGCATCACTTGGTGGAATGGGCAAGGCCTAAAAAAAACCATGGAGGAGGAGCACAATATCAGCAATTAATGGATCCAAAGCTTGATGGCCACTACTCAATCAAAGGAGCACAAAAGTCAATGAGGTTGGCTTATCAGTGCCTCTCAAAAGATCCCAAATCACGACCACTGATGAGTCAGGTCGTTCAGGGAAAGAAACCTATAAGAGATAATGGCAAAGCTCCAGTGGTTGTTGAAGCATCCTCAAGCAACAATAACAATCAAGGAACAAGTGGATCTACTCCCCAGCTGATCATGGAACTACAATATCATTCCAATCTTAGGCAATTCACCTTTCATGAGCTCAAGTTGGCAACTGAGAATTTCAAAGCTGGAAATTTTCTTGGTGAGGGAGGCTTTGGTACTGTACATAAAGGATGGATCATTCAGAACGATTGCTCCCCATCAAAACCTGGAGTAGGGATTCCAGTTGCAGTAAAGACACTCAACAAAGAAGTGAGCAATCTCGGTGCCCTGGAACACCCCAACCTTGTTAAATTGGTTGGATACTGCATAGAAAGAGATAACAGGGTTTTGGTGTATGAGTTTATGCCTAGAGGAAGTTTAGAACATCATCTCTTTAGGAGTACAGGAGGAGCATTTCCCCTTCCATGGTCTATCAGACTGAAAATTTTGATTGGTGCTGCAAAGGGCCTTACTTTCTTGCATGGGGAAGCTACGAAGCCATTAATTTATCGCGACTTCAAAACTTCTAACATCCTATTGGATTCGGACTACAGTGCGAAACTTTCTGATTTTGGGTTGGTGAAAGATGCCCCAATGGCTGACTTGACTCATGTATCAACTAGATTGATGGGAACTCAAGGGTATGCAGCCCCTGAGTATGTTATGATAGGGCACTTGAGTTCGAATAGTGATGTGTATAGCTTTGGAGTGGTATTGCTTGAGGTGATGACAGGGAGAAGGGTGATGGATAAGAAGAGGCCAGTAGCGGAGCATCACTTGGTGGAATGGGCAAGGCCTCAAATAAAGCCTGGATCAGGAGCACAATACCACCAAGTGATGGATCCAAATCTTGATGGCCACTACTCAACCAAAGGAGCACGCAGGGCAATGAGGTTGGCTTATCATTGCCTTTCAAGAGATCCCAAATTACGACCACTCATGAGTCAAGTCGTTGAGGGACTACACTGTGCCTTGCAGTATACTGATTTAGCATGTGCCTCACCGTTCTATCATCACATCATGAAACAAGGACAAGGTCAAGGTGCCCCTTCTTCTTCCAACTCCAAACCAGCCTCCACTAATAATATTGCTACTAACAAATATGGGCTAATAATTGGGCCATCGACGGGGAGCACACCAAGTCGCTTTCAAGCCTCTCCATTGAGTTTTACCCATCCTTTTCCTTCACCCCAACCTAGTGCTGGTGCTGGTTGA 1776 0.4459 MRLKILIGAAKGLAFLHEEAKKPLIYRDFKTSNILLDSDYNAKLSDFGLVKDAPTGDLTHVSTRVMGTQGYAAPEYVMTGHLSSKSDVYSFGVVLLEILTGRRTIDKKRPVAEHHLVEWARPKKNHGGGAQYQQLMDPKLDGHYSIKGAQKSMRLAYQCLSKDPKSRPLMSQVVQGKKPIRDNGKAPVVVEASSSNNNNQGTSGSTPQLIMELQYHSNLRQFTFHELKLATENFKAGNFLGEGGFGTVHKGWIIQNDCSPSKPGVGIPVAVKTLNKEVSNLGALEHPNLVKLVGYCIERDNRVLVYEFMPRGSLEHHLFRSTGGAFPLPWSIRLKILIGAAKGLTFLHGEATKPLIYRDFKTSNILLDSDYSAKLSDFGLVKDAPMADLTHVSTRLMGTQGYAAPEYVMIGHLSSNSDVYSFGVVLLEVMTGRRVMDKKRPVAEHHLVEWARPQIKPGSGAQYHQVMDPNLDGHYSTKGARRAMRLAYHCLSRDPKLRPLMSQVVEGLHCALQYTDLACASPFYHHIMKQGQGQGAPSSSNSKPASTNNIATNKYGLIIGPSTGSTPSRFQASPLSFTHPFPSPQPSAGAG. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00536 591 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00536 591 FunFam Receptor-like serine/threonine-protein kinase ALE2 1 198 - -
Seca9g00536 591 Pfam Protein tyrosine and serine/threonine kinase 236 506 IPR001245 GO:0004672|GO:0006468
Seca9g00536 591 PANTHER OS01G0588500 PROTEIN-RELATED 203 510 - -
Seca9g00536 591 Gene3D Phosphorylase Kinase; domain 1 214 308 - -
Seca9g00536 591 ProSiteProfiles Protein kinase domain profile. 234 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00536 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Seca9g00536 591 MobiDBLite consensus disorder prediction 557 591 - -
Seca9g00536 591 SUPERFAMILY Protein kinase-like (PK-like) 2 175 IPR011009 -
Seca9g00536 591 MobiDBLite consensus disorder prediction 557 578 - -
Seca9g00536 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Seca9g00536 591 FunFam Receptor-like serine/threonine-protein kinase ALE2 309 522 - -
Seca9g00536 591 CDD STKc_IRAK 240 508 - -
Seca9g00536 591 Pfam Protein kinase domain 8 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00536 591 SUPERFAMILY Protein kinase-like (PK-like) 219 524 IPR011009 -
Seca9g00536 591 Gene3D Transferase(Phosphotransferase) domain 1 1 199 - -
Seca9g00536 591 Gene3D Transferase(Phosphotransferase) domain 1 309 520 - -
Seca9g00536 591 ProSitePatterns Protein kinases ATP-binding region signature. 240 272 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00536 Seca-Chr9 11020414 11028581 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00536 181 508 Glycoside Hydrolase AT3G07070 44.606 3.34e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g00536 PK_Tyr_Ser-Thr 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00536 - - vvi:100854748 466.077