Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00534 ATGGCAAGCCCGGCAGGTGTTGGATCTAAGACTAGAGTTGGTAGGAATGTGGGAAAATCCAAAGGAGGAAAAGACAAAGGTGTCAAAGGTGAAGGTTCAAGCTTTTGGATGAAACTCTGGATGTTGTTCTCTTGCATGGCTTGGGGGTCCAAAGCGGAACATTGCTCCTCAGGTGACACTGGCAGCAACAACAAACAGGATAAGGGAAAGAAACCTATAAGAGATATTTCCAAAGCCCCAGTGGTTGCTGAAGCATCCTCAAGCAACAATAACAATCAAGAAACAAGTGGATCTACTCCCCACCTGATCATGGAACTGCAACAATATTCCCATCTTAGGCAATTCACCTTTCATGAGCTCAAGTTGGCAACTAAGAATTTCAAAGCTGGGAATTTTCTTGGTGAGGGAGGCTTTGGTACTGTACATAAAGGATGGATCACTCAGAACGGTTGCTCCCCATCAAGACCTGGAGTGGGGATTCCAGTTGCAGTGAAGACACTCAACATAGAAGGAAATCAGGGTCATAAAGAATGGGTGGCTGAAGTGAGCAATCTAGGTGCCATGGAACACCCCAACCTTGTTAAATTGGTTGGATACTGCATAGAAGGAGATAACAGGGTTTTGGTGTATGAGTTTATGCCTAGAGGAAGTTTAGAACATCATCTCTTTAGGAGAGGAGCATTGCCCCTTCCATGGTCTATCAGACTGAAAATTTTGATTGGTGCTGCAAAGGGCCTTACTTTTCTACATGAGGAAGCTACAAAGCCATTAATTTATCGAGACTTCAAAACTTCTAACATCCTATTGGATTCGGACTATAGTGCGAAACTTTCTGATTTTGGGTTGGTAAAAGATGCCCCTGTGGATGGCTTGACTCATGTATCAACTATAGTGATGGGAACTCAAGGGTATGCAGCCCCTGAGTATGTGATGACAGGGCAATTGAGTTTGAAGAGTGATGTGTATAGCTTTGGAGTGGTACTGCTTGAGGTAATGACAGGGAGAAAGGCGATGGATAAGAAGAGGCCAGTAGCGGAGCATCACTTGGTGGAATGGGCAAGGCCTCAAATAAAGCCTGGATCCGGAGCACAATACCACCAAGTGATGGATCCAAAGCTTGATGACCACTACTCAACCAAAGGAGCACGCAGGGCAATGAGGTTGGCCTATCAGTGCCTTTTAAGAGATGCCAAATCACGACCACTCATGAGTCAGGTCGTTGAGGGACTACACTGTGCCTCGCAGTATACTAACTTAGCATGTGCCTCACCATTCTATCATCACATCATGAAACAAGGACAAGGTCAATGTGCCCCTTCTTCTTCCAACTCCAAACCAGCCTCAGCTAATAATATTGCTACCAACAAATATGGGTTGATAATTGGGCCATCGGCAGGGAGCACACCAAGTCGCTTTCAAGCCTCTCCATTGAGTTTTACCCATCCTTTTCCTTCACCCCAACCTAGTGCTGATGCTGGTTGA 1482 0.4548 MASPAGVGSKTRVGRNVGKSKGGKDKGVKGEGSSFWMKLWMLFSCMAWGSKAEHCSSGDTGSNNKQDKGKKPIRDISKAPVVAEASSSNNNNQETSGSTPHLIMELQQYSHLRQFTFHELKLATKNFKAGNFLGEGGFGTVHKGWITQNGCSPSRPGVGIPVAVKTLNIEGNQGHKEWVAEVSNLGAMEHPNLVKLVGYCIEGDNRVLVYEFMPRGSLEHHLFRRGALPLPWSIRLKILIGAAKGLTFLHEEATKPLIYRDFKTSNILLDSDYSAKLSDFGLVKDAPVDGLTHVSTIVMGTQGYAAPEYVMTGQLSLKSDVYSFGVVLLEVMTGRKAMDKKRPVAEHHLVEWARPQIKPGSGAQYHQVMDPKLDDHYSTKGARRAMRLAYQCLLRDAKSRPLMSQVVEGLHCASQYTNLACASPFYHHIMKQGQGQCAPSSSNSKPASANNIATNKYGLIIGPSAGSTPSRFQASPLSFTHPFPSPQPSADAG. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00534 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca9g00534 493 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 213 421 - -
Seca9g00534 493 MobiDBLite consensus disorder prediction 468 493 - -
Seca9g00534 493 FunFam Serine/threonine-protein kinase BIK1 94 212 - -
Seca9g00534 493 MobiDBLite consensus disorder prediction 1 29 - -
Seca9g00534 493 Gene3D Transferase(Phosphotransferase) domain 1 213 423 - -
Seca9g00534 493 PANTHER OS01G0588500 PROTEIN-RELATED 89 411 - -
Seca9g00534 493 ProSiteProfiles Protein kinase domain profile. 127 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00534 493 Gene3D Phosphorylase Kinase; domain 1 107 212 - -
Seca9g00534 493 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
Seca9g00534 493 Pfam Protein tyrosine and serine/threonine kinase 129 408 IPR001245 GO:0004672|GO:0006468
Seca9g00534 493 CDD STKc_IRAK 133 410 - -
Seca9g00534 493 SUPERFAMILY Protein kinase-like (PK-like) 113 425 IPR011009 -
Seca9g00534 493 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00534 Seca-Chr9 10968542 10970585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00534 43 410 Glycoside Hydrolase AT3G07070 43.733 2.57e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g00534 PK_Tyr_Ser-Thr 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00534 - - tcc:18601446 478.789