Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00519 ATGGGTGAGGTGAAAGAAGAAAATGAAAGATTGAAGATGACACTAGAGCAAGTTGAAAAGAATTACCAATCTCTTCAACTGCGTTTCTTTGACATCCTTGAGAGAGAATCTTCCAAGAAAGGTGTGGAAGATTCAGCTCCTTCCCCTGATGAAGTGGAAGAAGAACCTAAGCTTGTGTCACTATGTCTTGGAAGAAGTCCAAAGAGGCCTAAAAAGGATGAACCAATTGGTAGCTCTAGCAAACCTAAAGAAAATGAAGATTTGGATGCCAGCCTTACCCTTGGTTTACACTCCAAAAGCCTGTCTTCAATGGAGCTGGTATCTGATCTGAGCCCCATGAATAGCTCAGAAGAACTAAAAGAAGCTGATGGAGGGGGAACATGTTCAACACATAAATCATTAAGGACCAAAGATGGTGGTGATGATAGTTCTGAGCTAACACCTACCAAGAGAGCTAGAGTTTGTGTGAGAGCCAGATGTGATACTCCCACGATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCTCCAGCTTGCCCAGTCAAGAAGCAGGTGCAAAGATGTGCTGAGGACATGTCCATCTTAATCACCACATATGAAGGAACCCACAACCACCCACTTCCAGCTTCAGCCACAGCCATGGCTTCCACTACTTCTGCTGCTGTTTCAATGCTATTGGCAGGTTCTTCAACATCTCAGCCTACAGGCCACAGTTCAGCATCTATTGGAAATTCTCCTATAGTTTTCAATGGTCTGAAGTTTAGCCCTTTTGATCAATCAAGAGCAACACAGGCTTTCTTACCAACCCCCACCCAACATTTGTTCCCAACAATCACTCTAGACCTGACTTCTGCTTCATCCTCCTCATTAACTCAAGCCCTTAGTTTACCTTCAAGCTTTGCTTCAAACTCAAGATTCCCTCCATCAAGTCTAAGCTTTTGCTCCCCAGAACCCAATATCCCAGCATCCTTTTGGGGCAGGGGACTTCCTAGCAATGACAATGGTACTATGCCTATTGACAAAACCCACATCAGGCCAATTAATCTGGGAAACCAATTTCAAGAACATTTCTACCAACACTCTATCAAGAACCAAACTGATTTCAGGAAGGAGTTGGCAGAAACACTAGCCAAAGCAATCAGCACTGACTCAAGTCTTCGCTCTGTAATAGCTGCTGCTGTTTCATCTATAGGGGGACAAGGATCAACAAGTAGGAACCAGGGTGGAGAAGAGATTTTAGGTTCAGGTTTGAGCTTGAAACTAGGTGAGCATCCTCAAGTTTCTTCTTCCAATCCCTTGAACCAGAATGGAAAAGGATGCTTAACAGGCTACTTCAACAGATCATCATCTTCAAGTTCTCAGGCTGGAAACTTCATGCTTCTTCAACCTCCACGGCCATTTTCTCTCTAA 1464 0.4392 MGEVKEENERLKMTLEQVEKNYQSLQLRFFDILERESSKKGVEDSAPSPDEVEEEPKLVSLCLGRSPKRPKKDEPIGSSSKPKENEDLDASLTLGLHSKSLSSMELVSDLSPMNSSEELKEADGGGTCSTHKSLRTKDGGDDSSELTPTKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVKKQVQRCAEDMSILITTYEGTHNHPLPASATAMASTTSAAVSMLLAGSSTSQPTGHSSASIGNSPIVFNGLKFSPFDQSRATQAFLPTPTQHLFPTITLDLTSASSSSLTQALSLPSSFASNSRFPPSSLSFCSPEPNIPASFWGRGLPSNDNGTMPIDKTHIRPINLGNQFQEHFYQHSIKNQTDFRKELAETLAKAISTDSSLRSVIAAAVSSIGGQGSTSRNQGGEEILGSGLSLKLGEHPQVSSSNPLNQNGKGCLTGYFNRSSSSSSQAGNFMLLQPPRPFSL. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00519 487 Gene3D WRKY domain 150 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g00519 487 ProSiteProfiles WRKY domain profile. 160 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g00519 487 MobiDBLite consensus disorder prediction 36 86 - -
Seca9g00519 487 FunFam probable WRKY transcription factor 31 150 227 - -
Seca9g00519 487 Pfam WRKY DNA -binding domain 166 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g00519 487 MobiDBLite consensus disorder prediction 468 487 - -
Seca9g00519 487 SUPERFAMILY WRKY DNA-binding domain 158 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g00519 487 MobiDBLite consensus disorder prediction 105 147 - -
Seca9g00519 487 MobiDBLite consensus disorder prediction 36 58 - -
Seca9g00519 487 Coils Coil 1 28 - -
Seca9g00519 487 SMART WRKY_cls 165 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g00519 487 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 424 IPR044810 GO:0003700
Seca9g00519 487 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00519 Seca-Chr9 10778907 10782525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00519 1 463 WRKY Transcription Factor Family AT5G15130 44.223 1.19e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g00519 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00519 - - gmx:100819296 648.662