Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00510 ATGGAAATGGTGATAAAGAATGAAGAGAAGAGAAGCTGGGTGTCCATGGCAGAAGGTGAGTTTCAGGTGGCACGGTTTGCCAAGAGACGTCGAAGAGAGCCTGCAGGAGCTGCACCAACTTGTGAGGGTAACAAAGGTCAGAAGCAACAGTTGCTGCCACGGCAACAAGCTGATCAAAATTCCACTACCAGCACTACAAAAAGAAGTTCAAGATTTCGGGGTGTCAGCAGGTGTTCTGTTTCATTACTAATCCAAGTTGAACTTGAACAAACAGACATAGATGGACGGGTCGATTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATCACCCAAAAGAAGAAAGGGAAGCAAGGTAGGGTCCCTCCTTTTAGGCTTTGGCACCCTCTGCTCTGTTGCTTACTGTTTCAGTAATATTATTCATTTGTTTATCCTTTCTAACATAGAAATGTGTTTTCATGTTCAAACTTTGCCTTTGGAACTGGATTGGAATTGGTTGTTGAGACCAACAGTTTACCTTGGGGCTTACGATGAAGAAGAATCAGCAGCCAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCTATGATTCATCTAATGCTCCTTATACTTCCAACAGATCTCGGATTACGAAAAACAGATAGAGATAATGCAAACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGGAGGTAAGAGTAAAACCTGTGATTTTGTCTGTGGTCCTGATGGTAGTGTTTGCAATACATAGAGACAGGTTTAGGAGCATCATCATAGCAACTTCACCCATATATGACTCTTTGCTTCCTTCTTACAGAAAGAGTAGTGGCTTTTCAAGAGGTGCATCAAAGTATAGGGGTGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGGATCGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATCCATGCTGTAACCAACTTTGACCTGAGTACTTACATAAGATGGTTAAATCCTTCAGCAGGAAATATCTCAGAAACAGAACTTGAATCAAAGGTAGCACCAGAGTCTCAGACAGTGGCTTCCCAATCTAACTACTCTCAAATAGAGGGATCCAAATCCTTGGCCCTTTACAGCAGTACTTACAATCCAGATTATCTGAATTTCCCTCAAAAGCACGAAGTCGTTGAAAACAAAACATACCAAATCTCCAGCACTAAGTCATCTTCTCCGACTGCACTTGGGCTCCTTCTCCGCTCTTCAGTATTTAGAGAATTAGTTGAAAAGAATTTGAACATATCTGGAGATGAAACTGATGGGGAAGACACAAAGGACCAACAGCCACAGACAGCTAGTGATGATGAGTTGATTGGGATCTTTTATGATGGAACTGGTGATATCCCATTTCCGTGA 1479 0.4266 MEMVIKNEEKRSWVSMAEGEFQVARFAKRRRREPAGAAPTCEGNKGQKQQLLPRQQADQNSTTSTTKRSSRFRGVSRCSVSLLIQVELEQTDIDGRVDLKLTYGTSSLGTSPKRRKGSKVGSLLLGFGTLCSVAYCFSNIIHLFILSNIEMCFHVQTLPLELDWNWLLRPTVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPMIHLMLLILPTDLGLRKTDRDNANYDKRGVLGHFKEVRVKPVILSVVLMVVFAIHRDRFRSIIIATSPIYDSLLPSYRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLNPSAGNISETELESKVAPESQTVASQSNYSQIEGSKSLALYSSTYNPDYLNFPQKHEVVENKTYQISSTKSSSPTALGLLLRSSVFRELVEKNLNISGDETDGEDTKDQQPQTASDDELIGIFYDGTGDIPFP. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00510 492 ProSiteProfiles AP2/ERF domain profile. 172 204 IPR001471 GO:0003700|GO:0006355
Seca9g00510 492 MobiDBLite consensus disorder prediction 455 471 - -
Seca9g00510 492 Pfam AP2 domain 292 343 IPR001471 GO:0003700|GO:0006355
Seca9g00510 492 CDD AP2 292 353 IPR001471 GO:0003700|GO:0006355
Seca9g00510 492 Gene3D AP2/ERF domain 292 353 IPR036955 GO:0003700|GO:0006355
Seca9g00510 492 Gene3D AP2/ERF domain 150 206 IPR036955 GO:0003700|GO:0006355
Seca9g00510 492 SUPERFAMILY DNA-binding domain 170 205 IPR016177 GO:0003677
Seca9g00510 492 MobiDBLite consensus disorder prediction 43 70 - -
Seca9g00510 492 ProSiteProfiles AP2/ERF domain profile. 293 351 IPR001471 GO:0003700|GO:0006355
Seca9g00510 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 413 - -
Seca9g00510 492 SMART rav1_2 164 210 IPR001471 GO:0003700|GO:0006355
Seca9g00510 492 SMART rav1_2 293 357 IPR001471 GO:0003700|GO:0006355
Seca9g00510 492 FunFam AP2-like ethylene-responsive transcription factor 292 353 - -
Seca9g00510 492 MobiDBLite consensus disorder prediction 455 479 - -
Seca9g00510 492 MobiDBLite consensus disorder prediction 27 70 - -
Seca9g00510 492 SUPERFAMILY DNA-binding domain 292 353 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00510 Seca-Chr9 10529135 10531461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00510 172 355 AP2-EREBP Transcription Factor Family AT1G72570 48.370 2.08e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g00510 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00510 - - lja:Lj1g3v2952280.1 349.747