Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00501 ATGGTTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTTCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACCAAGGACGACAGACGTTTGGTTGGTAAGTTTTATTTACACTATGTTTAA 450 0.3689 MVSRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSFIPLYGFSFVPFVEILNETKDDRRLVGKFYLHYV. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00501 149 SUPERFAMILY Nucleic acid-binding proteins 15 114 IPR012340 -
Seca9g00501 149 Gene3D - 8 115 IPR012340 -
Seca9g00501 149 CDD RPA1_DBD_A_like 21 109 - -
Seca9g00501 149 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00501 Seca-Chr9 10453131 10453668 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00501 20 130 Core DNA Replication Machinery Family AT5G08020 28.070 1.49e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00501 - - adu:110274503 167.933