Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00500 ATGGGGTTTGGAAATAATGCAGTTCAGGCAGGGAGTTTGGATGTTGACAAGTCAAAGGGAAGGAAGAAGGTGGATGGTGCAAAGAAGGAGAGAAGATGGTGTTTTAGATTCAGTTTCTTTGGGAGCTGCATACCTTCAAGATCAAAAGTTGATAGCTCCATAAGTGGCTCTAGTACCCATAATGGTGACAATAACAAGTCAGTGATAATTCAATCAGAGGAAAACAAATCTGGATTTGAAAAAAATACAAAGGAAACAAATGCTCCTGCAGAGTCCTCTACAACAACTAGTAATGCGGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTTGTTTGAGAAAATTCACATTCAATGGGCTTAAGGTGGCAACTAGGAATTTCAAACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAAGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGGCTTACAGTTGCAGTCAAGATCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAACTGAACTATCTTGGTGATCTTGTCCATCCTAATCTCGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCTCGAGGCAGTTTGGAGAACCACCTCTTTAGAATAACAACCATGTTTGATGCAAAAGGGCCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTCGCTTTTCTCCATGAAGAAGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATTCTTTTAGATGCGGAATACAATGCAAAGCTTTCTGATTTTGGACTTGCCAAAGATGGACCTGAGGGGGAAAAGACACATGTATCAACAAGAGTTATGGGCACATATGGTTATGCTGCTCCCGAGTATGTCATGACTGGACATCTGTCATCAAAAAGCGATGTCTACAGCTTTGGGGTAGTGCTACTTGAAATGCTCACAGGCCGTCGATCTATTGATAAGAAAAGACCAAATGGAGAACACAATCTGGTGGAGTGGGCAAGACCTGTACTTGGAGACAGGAGGAGGTTCTACCAGATAATTGATCCCCGCCTTGAAGGTCACTTCTCAGTTAAAGGGGCACAGAAAGCTGCCGAGCTGGCTGCTCAATGCCTTAGCCGTGATCCAAAAGCTAGACCTTTGATGAGTGAAGTTGTTCAAACTTTAAAACCTTTGCCAAACCTTAAGGACATGGCTATCTCATCTTATCACTTCCAGATTGCGCGAGTAGATCGTACCATGTCCATGCCAAATCCTAAAAATGGTATTAGAACACAGTCAGTATCTTTACAAAGGAAGGGTCAACCTGTAAGGACCTTGTCAAGTTCAAATCTTCCACATGGTTCTCCATATCCTCATTATAGTAAGTCTCCAAAACCTATAGGGTAA 1485 0.4249 MGFGNNAVQAGSLDVDKSKGRKKVDGAKKERRWCFRFSFFGSCIPSRSKVDSSISGSSTHNGDNNKSVIIQSEENKSGFEKNTKETNAPAESSTTTSNAESIPSTPKFSEELKVASCLRKFTFNGLKVATRNFKPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRITTMFDAKGPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLSSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRRFYQIIDPRLEGHFSVKGAQKAAELAAQCLSRDPKARPLMSEVVQTLKPLPNLKDMAISSYHFQIARVDRTMSMPNPKNGIRTQSVSLQRKGQPVRTLSSSNLPHGSPYPHYSKSPKPIG. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00500 494 Gene3D Transferase(Phosphotransferase) domain 1 219 441 - -
Seca9g00500 494 ProSiteProfiles Protein kinase domain profile. 133 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00500 494 PANTHER OS01G0588500 PROTEIN-RELATED 89 424 - -
Seca9g00500 494 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00500 494 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
Seca9g00500 494 SUPERFAMILY Protein kinase-like (PK-like) 108 421 IPR011009 -
Seca9g00500 494 MobiDBLite consensus disorder prediction 450 482 - -
Seca9g00500 494 FunFam Probable serine/threonine-protein kinase PBL8 219 440 - -
Seca9g00500 494 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Seca9g00500 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Seca9g00500 494 MobiDBLite consensus disorder prediction 446 494 - -
Seca9g00500 494 FunFam Serine/threonine-protein kinase BIK1 100 218 - -
Seca9g00500 494 MobiDBLite consensus disorder prediction 47 105 - -
Seca9g00500 494 CDD STKc_IRAK 139 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00500 Seca-Chr9 10442177 10446854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00500 119 437 Glycoside Hydrolase AT3G07070 54.859 2.03e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g00500 Pkinase 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00500 - - gmx:100499647 837.025