Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00491 ATGGAAAACTCAAGGAAGAAAGTGTTAGAGCTGCCCCCTCTAATAAGAGAGAATTATTATGTTAAATTTTCAGCAAAAGAACTTGAGGTCTATGATGAGGTGAAAGAGGAAGTAAAACCCATCCTAAAACACCATGACAAAAACAATGTCATCAATCCGTATTTTGATGTAGATTATAATATGCAAAAACTTCGTCTAGTGTGCTCTCAGCATGGATTGGACTATGCAATATGGACGGACTACTGCGTAATTGACTTTGAAGATGTTTCAAGCAATCGTGACTTGCAAAAAAAGTTGTCAGGCAAGGATTATACGTGTCCAGTTTGTATGTCTCATCATGCAACGGCTTCACTGATTTCACATTGTGGTCAGACCTTTTGCCGAGACTGTATCCGCAATTGGCTTGAGAATAACCTCCATTGTCTTGTTTGCCGGTCCAGTATCTCAATGGGTGACCTATTTTCTTGTAATTCTTCGATAAAAGTGGATCCATCCATCAAAGTCTCTGCTGTTACAGAACTTATCATGAAATCTCAGAAAAATAATCAATCAACAAAATTTGTTATATTTTCAGGATTTGATGAGGTGACAGCATTTATGGAAAATTATTTAAGAGAAGTTGAGTTCAAGACCTTCCTAATGACTAAAATGAGAGTAAATCTTGAGGCAACCTCTACAGTATTCATCATGGAATCGTGGCTCTGTCCTGAAATTGAGGCGAAGATGATTGAACTTGTTCATGGTATTGGTTAA 753 0.3732 MENSRKKVLELPPLIRENYYVKFSAKELEVYDEVKEEVKPILKHHDKNNVINPYFDVDYNMQKLRLVCSQHGLDYAIWTDYCVIDFEDVSSNRDLQKKLSGKDYTCPVCMSHHATASLISHCGQTFCRDCIRNWLENNLHCLVCRSSISMGDLFSCNSSIKVDPSIKVSAVTELIMKSQKNNQSTKFVIFSGFDEVTAFMENYLREVEFKTFLMTKMRVNLEATSTVFIMESWLCPEIEAKMIELVHGIG. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00491 250 ProSiteProfiles Zinc finger RING-type profile. 106 145 IPR001841 -
Seca9g00491 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 214 IPR027417 -
Seca9g00491 250 SUPERFAMILY RING/U-box 102 155 - -
Seca9g00491 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 189 IPR013083 -
Seca9g00491 250 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 4 250 - -
Seca9g00491 250 Pfam Zinc finger, C3HC4 type (RING finger) 103 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00491 Seca-Chr9 10297355 10298295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00491 6 250 RAD5 or RAD16-like Gene Family AT5G05130 26.510 2.32e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00491 - K15711 pda:103713263 116.316