Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00488 ATGAAAGGAGGGGCTAACAAGGCTTGTGCAGCCTGTAAATACCAAAGACGAAGATGCTCAAAGGATTGTCCTCTAGCTCCATATTTCCCTGCAGATAAACCCAAAACGTTTAGCAATGCTCATCGTTTATTCGGCGTGGCAAATATAATCAGAATCATGAATCAAGTTGCGCATGATGAGAAAGATGAAGCAATGAAGTCAATTATATTTGAGTCTGATATCCGTGCAAAATATCCGCAACACGGATGTTATGGAGTTATTATGCAGTATCAAGATATGATATGCAAAGCAGCTGAAGAGTTCCAATATGTACAATCATTGCTTACTCTTTATAAGGAAAGTAATTATCAAATGCAACACCATCATGTTATGCATGCAAATCAAACATATTTATTGTCTCCTACAATATATAATAATGTTAGTGCTAGTATCATAGATTCAAAGTCTGACTTGACTTCAATGCAAAGATTATCATCAGTACATGGAGAATTGAACATTCCTACTACTACTACTACTACAGATGCAAGGTCAGTACTCGACATTCCTTTCATAGATGCAAGATCTGAACAATTGAATGTTGAGATGACTAGTGATGCTATAAATGAAAAATCTAATTTGATGTTGGTGTCATGTCACGAAGAAGAGGACAATATTCCTGGTAATACTAATGCAAGATCAGTGGAAATTCCTATAAATGATGCTGCAACTGCTAATCTGAGCTTAATGTCATCTAATGATCATGAAGAGCATGATGCTTCTGCAAGCTGTTTGATCACTAATTTTAACTCAGATGATGTTGACACAAAATATGCAAAATTTGATTTAAAGAAAGCACAAGGATTGCTGACTTGGAATGACATAGACATGTTTGAACATGTCAATGAGTTTGTTAATGGAAGCAAAAGTGTATGTGAATCCAGGTATAAATTTACTGTTCATTTAAAGATGACTTTTCTTGTATTATTAGCTAGGACGTTAATTTGCAATTTTTATTTTTGTAATTTTTTTTTCTTTTTTAATGCAGAGTTTCAAATTATGGTATTTATATACATGTTTCATGATTGTAATTTGCAGTGTGGAATCTGA 1086 0.337 MKGGANKACAACKYQRRRCSKDCPLAPYFPADKPKTFSNAHRLFGVANIIRIMNQVAHDEKDEAMKSIIFESDIRAKYPQHGCYGVIMQYQDMICKAAEEFQYVQSLLTLYKESNYQMQHHHVMHANQTYLLSPTIYNNVSASIIDSKSDLTSMQRLSSVHGELNIPTTTTTTDARSVLDIPFIDARSEQLNVEMTSDAINEKSNLMLVSCHEEEDNIPGNTNARSVEIPINDAATANLSLMSSNDHEEHDASASCLITNFNSDDVDTKYAKFDLKKAQGLLTWNDIDMFEHVNEFVNGSKSVCESRYKFTVHLKMTFLVLLARTLICNFYFCNFFFFFNAEFQIMVFIYMFHDCNLQCGI. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00488 361 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Seca9g00488 361 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Seca9g00488 361 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00488 Seca-Chr9 10259787 10260872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00488 1 112 AS2 family AT3G47870 58.929 1.04e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g00488 LOB 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00488 - - lang:109346924 172.17