Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00477 ATGGGGATTGGGGACTTATGGTCACAACTAGGCTCAATTATGGCTAGCATTATGTTTGTGTATGCCATGTATGAACAATTCTTCCCACCCCATCTTCGAACCTATGTTAAAAAATACACACACAAATTCACAGGCCTTATGTACCCTTACATCCAAATCAACTTCTCTGAATTCTCAGGGGAGCGTCTCAAACGCAGTGAAGCTTACACTGCCATCCAAACCTACCTCAATAGCCAAACCCCACTTGTTCTCAGCATGGATGACAATGAAGAAATCACTGATGAGTTCAAAGGAGTAAAAGTTTGGTGGGCTGCAAATTACACCATCCCAAAAACACAATCTTTTTCATGGTACCCCACTACTGATGAAAGAAGATTCTTAACACTCACCTTCCATAGGCGTCACCGTGATCTCATCACTGGTTCTTACATCCAACATGTGTTGGAACAAGGCAAGCAATTGAAGCTTTACACCAACAACCCCAGCAATGATTGGTATGGTTACAAACGCACAAAGTGGAGCCATATAGTTTTTGAACACCCTGCAAAGTTTGAGACTTTGGCTATGGATCCACAAAAGAAGGAAGAGATTGTAAATGACCTTGTTAAGTTCAAACAAGGGAAAGAGTATTATGCTAAGGTTGGTAAGGCTTGGAAACGTGGAACTGGCAAGTCTACAATGATAGCTGCTATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAGTTAACAGCAGTGAAGGACAACACTGAGCTAAAAAAGCTTTTGATTGACACATCAAGCAAGTCAATTATAGTGATTGAAGACATTGATTGCTCTCTTGATCTTACAGGACAGAGGAAGAAGCCAAAGGAGAAACAAAAGGATGAGGCTAAGAAAGCTGAAGAAGAAGAGAATAAGGGAAGTAAGGTAACTCTTTCTGGGTTGTTGAATTTCATTGATGGGATTTGGTCAGCTTGTGGAGGGGAGAGGATCATCATTTTCACAACCAATTTTGTGGATAAACTTGATCCTGCTCTCATTAGGAGAGGTAGGATGGATAAGCATATAGAAATGTCCTATTGTAGCTATCAAGCTTTTAAGGTGTTGGCCAAGAACTACTTGGATCTGTTTGGAGAGACCAATATGACACCTGCTGATGTTGCTGAGAATTTGATGCCAAAGTCAATCACTGAAGAGAAGGACACTTGCTTGCAGAATCTGATTCAATCCCTTGAGGAGGCTAAGAAGAAGGAAATGGAGGAGGCTAAGAAGAAGGCAGAGGAGGAAGCAAAGAAGAAGATTGAGGAAGAGGAAGAGAGGTTGAAGGTAGAGAAAGATAAAGAAGAATTGGTTCAAAAGGAAGAAGTGTTTAAGCAGTTGTTTCCCCCTCCCCTTCGTGCCCGTTTTCAAAAGTACACTGACAAATTAACCAGCTTTGTCTACCCTTACATCAGAATCACCTTCCATGAATTCACTGGTGAACGTCTCATGAGGAGTGAGGCTTTCTCTGCCATCCAAATCTACCTCAGTGAACACTCCTCACAAAAAGCCACTAAGCTCAAAGCTGAATCTGTCAAAGACAGCAACACCCCTTTGGTCCTTAGCATGGCTGACAATGAAGAAATCACAGAAGAGTTTCAAGGGGTCAAGCTTTGGTGGGCTTCATACAAATCCACCCCAAAAACACATTCTTTTTCTGTTTACCCTGCTGCAGATGAGAAGAGGTACTACAAACTCACCTTTCACAAGCGTTATAGAGACCTCATCATTGAGAGTTACCTCAAACATGTCTTTGAAGAAGCAAAGGCAATTGAGATGAAGAACAGGCAGCTGAAGCTGTACTCTAACAGCAAGACAAAGTGGAGTCATGTGCTTTTTGAGCATCCTGCTACATTTGAGACATTGGCACTGAAGGCAAAGAAGAAAGAGGAAATTATCAATGATCTTGTTAAGTTCAAAACAGGGAAAAAGTACTATGCTAAAATTGGGAAGGCTTGGAAGAGGGGTTACCTTTTGTATGGTCCTCCAGGTACTGGGAAATCTACAATGATAGCTGCTATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAATTGACATCAGTGAAGGATAATTCAGATTTGAGAAAGCTATTGATTAATACTTCTAGTAAGTCAATTATAGTTATTGAAGATATTGATTGCTCACTTGATCTTACTGGTCAAAGGAAGAAGAAAGAAGAAAAATCTGAGGGGAAAGAAGGAGGAAAAGGTGATGAAGATGAGAAAGGTAGCAAGGTAACACTTTCTGGGTTGTTGAATGTTATTGATGGGATTTGGTCTGCTTGTGGTGGAGAGAGGATCATCATTTTCACAACTAATTTTGTGGATAAAATTGATCCTGCTTTGATTAGGAGAGGGAGGATGGATGTGCATATAGAATTGTCCTATTGTTGCTATGAAGCATTCAAGGTTCTTGTCAAGAATTACTTGGATGTTGAGTCTCACCATTTGTTTGCTAGAATTGAGAAGTTGTTGGGAGAGACAAAGATGTCACCTGCTGATGTTGCTGAGAATTTGATGCCAAAGTCAGTGGATGAAGAAGTGGACACTTGCTTGCAGAACTTGATTCAAGCTCTTGAGACATCCAAGGAAGATGCAAAGAAAGCAGAGGAGAAAGTGAGAAAGAAGGCAGAGGATGATGAAGTTGTTAAAAAGGCAGAGAAAGAAAGGAAGCTGCACAATCTGCAAGAGAAAGATGGTACTGAAAAACATGGTGAAGGAATGAAAGACAATGGGGTCATCCACTGA 2778 0.4075 MGIGDLWSQLGSIMASIMFVYAMYEQFFPPHLRTYVKKYTHKFTGLMYPYIQINFSEFSGERLKRSEAYTAIQTYLNSQTPLVLSMDDNEEITDEFKGVKVWWAANYTIPKTQSFSWYPTTDERRFLTLTFHRRHRDLITGSYIQHVLEQGKQLKLYTNNPSNDWYGYKRTKWSHIVFEHPAKFETLAMDPQKKEEIVNDLVKFKQGKEYYAKVGKAWKRGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELKKLLIDTSSKSIIVIEDIDCSLDLTGQRKKPKEKQKDEAKKAEEEENKGSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRRGRMDKHIEMSYCSYQAFKVLAKNYLDLFGETNMTPADVAENLMPKSITEEKDTCLQNLIQSLEEAKKKEMEEAKKKAEEEAKKKIEEEEERLKVEKDKEELVQKEEVFKQLFPPPLRARFQKYTDKLTSFVYPYIRITFHEFTGERLMRSEAFSAIQIYLSEHSSQKATKLKAESVKDSNTPLVLSMADNEEITEEFQGVKLWWASYKSTPKTHSFSVYPAADEKRYYKLTFHKRYRDLIIESYLKHVFEEAKAIEMKNRQLKLYSNSKTKWSHVLFEHPATFETLALKAKKKEEIINDLVKFKTGKKYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTSVKDNSDLRKLLINTSSKSIIVIEDIDCSLDLTGQRKKKEEKSEGKEGGKGDEDEKGSKVTLSGLLNVIDGIWSACGGERIIIFTTNFVDKIDPALIRRGRMDVHIELSYCCYEAFKVLVKNYLDVESHHLFARIEKLLGETKMSPADVAENLMPKSVDEEVDTCLQNLIQALETSKEDAKKAEEKVRKKAEDDEVVKKAEKERKLHNLQEKDGTEKHGEGMKDNGVIH. 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00477 925 ProSitePatterns AAA-protein family signature. 325 344 IPR003960 GO:0005524|GO:0016887
Seca9g00477 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 878 IPR027417 -
Seca9g00477 925 Gene3D - 172 355 IPR027417 -
Seca9g00477 925 Gene3D - 613 802 IPR027417 -
Seca9g00477 925 Pfam ATPase family associated with various cellular activities (AAA) 220 354 IPR003959 GO:0005524|GO:0016887
Seca9g00477 925 Pfam ATPase family associated with various cellular activities (AAA) 666 805 IPR003959 GO:0005524|GO:0016887
Seca9g00477 925 ProSitePatterns AAA-protein family signature. 776 795 IPR003960 GO:0005524|GO:0016887
Seca9g00477 925 Coils Coil 399 449 - -
Seca9g00477 925 Pfam Domain associated at C-terminal with AAA 28 79 IPR025753 -
Seca9g00477 925 Pfam Domain associated at C-terminal with AAA 456 551 IPR025753 -
Seca9g00477 925 Pfam Domain associated at C-terminal with AAA 81 104 IPR025753 -
Seca9g00477 925 FunFam AAA-ATPase ASD, mitochondrial 617 802 - -
Seca9g00477 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 414 IPR027417 -
Seca9g00477 925 MobiDBLite consensus disorder prediction 733 753 - -
Seca9g00477 925 CDD RecA-like_BCS1 640 804 - -
Seca9g00477 925 Coils Coil 862 889 - -
Seca9g00477 925 MobiDBLite consensus disorder prediction 280 299 - -
Seca9g00477 925 Gene3D - 803 874 - -
Seca9g00477 925 MobiDBLite consensus disorder prediction 876 925 - -
Seca9g00477 925 SMART AAA_5 661 808 IPR003593 GO:0016887
Seca9g00477 925 SMART AAA_5 210 357 IPR003593 GO:0016887
Seca9g00477 925 PANTHER BCS1 AAA-TYPE ATPASE 453 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00477 Seca-Chr9 10084487 10092882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00477 636 804 Calmodulin-binding Proteins AT3G56690 27.119 1.21e-09 60.5