Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00472 ATGAATATAATCATGCAATTGTTATTAGGAGCCAAAATTTGCATGCTTTTCTTGCCTCTTCATATCTTAAACGTTAACCCCTTTCACCACTTTAAAGTTAACCTTCAATGCACATTGCATCACCATTACATAATTCACTCAGTCCTTTCCCCATACACATATCTGCTTCTTTCTTCAAAAATGGGAAGACCTCCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTCCTGAAGAAGATGCTAAAATGCTTGCCTATTTATCCAATCATGGAACTGGAAATTGGACATTGGTTCCAAAGAAAGCAGGGCTTAACAGGTGTGGTAAGAGCTGCAGGCTAAGATGGACCAACTACCTAAGACCTGATCTCAAGCATGATAATTTTACTCCCCAAGAAGAAGAGCTAATTATCAACCTTCATGGAGCTATAGGAAGCAGATGGTCTTTAATTGCAAGAAGACTACCTGGGAGAACAGACAATGATGTCAAGAACTACTGGAACACAAAACTGAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTAACCCATAAGCCAGTGTCACAGGTCCTCTCTGACTTGGGAAGCATTAGTGGCATCCCAAACACTGGAAACCAAATGGGGTTAATCAACAAGGACTTGATGAGCAACATGCTACCAACCAGAACTGAACCATGTGCCAAGAAGAAGTCAATTGTGGAGCACACACAAGAGGATCAAGTTCACTCATGGGAAGAACAGGTGCAGTACCAAGTCATAAACCCAGAGAATGTCCAACAACATGTCCTTAGTGAAGCTGCATCCTCAAGCTCATCTTCATCTTCCTCTAATCTCACACAATTGAGCTCACCACAGTCCTATTCATGTCAAACTTCTCAGACTCAAATCACCACTCCTTGTTCTTCCTTTGATTGGAGTGAGTTTCTTCACAGTGACCCTTTTATGTGGTCAGAGAACCCCTCAGGTCTAATGCAAAGTGAAGTTGAACCTTCCAAATCCAATAATACCAACAGCAATGACCATGACAAGCAAAGTGCTGCATGTGATTATGGTTCTATGGATGTTGCTTGTGAAGCAAGCATGGAATATCAAATTAGCAAGCAATGTGGGAATTCATTTGTGGATGGTATTTTGGACAGGGATAGTGAGATAAGGGCAGCATTCCCTGAACTTTTGGATGGTTCTTTTGATTATTAA 1203 0.4131 MNIIMQLLLGAKICMLFLPLHILNVNPFHHFKVNLQCTLHHHYIIHSVLSPYTYLLLSSKMGRPPCCDKSNVKRGLWTPEEDAKMLAYLSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDNFTPQEEELIINLHGAIGSRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGIPNTGNQMGLINKDLMSNMLPTRTEPCAKKKSIVEHTQEDQVHSWEEQVQYQVINPENVQQHVLSEAASSSSSSSSSNLTQLSSPQSYSCQTSQTQITTPCSSFDWSEFLHSDPFMWSENPSGLMQSEVEPSKSNNTNSNDHDKQSAACDYGSMDVACEASMEYQISKQCGNSFVDGILDRDSEIRAAFPELLDGSFDY. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00472 400 PANTHER F14D16.11-RELATED 61 400 - -
Seca9g00472 400 MobiDBLite consensus disorder prediction 321 346 - -
Seca9g00472 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 176 IPR017930 -
Seca9g00472 400 FunFam transcription factor MYB80 129 189 - -
Seca9g00472 400 ProSiteProfiles Myb-like domain profile. 122 172 IPR001005 -
Seca9g00472 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 125 IPR017930 -
Seca9g00472 400 MobiDBLite consensus disorder prediction 264 287 - -
Seca9g00472 400 Pfam Myb-like DNA-binding domain 129 170 IPR001005 -
Seca9g00472 400 Pfam Myb-like DNA-binding domain 74 121 IPR001005 -
Seca9g00472 400 CDD SANT 77 121 IPR001005 -
Seca9g00472 400 Gene3D - 67 127 - -
Seca9g00472 400 FunFam Transcription factor RAX3 67 127 - -
Seca9g00472 400 ProSiteProfiles Myb-like domain profile. 69 121 IPR001005 -
Seca9g00472 400 SUPERFAMILY Homeodomain-like 71 168 IPR009057 -
Seca9g00472 400 CDD SANT 129 172 IPR001005 -
Seca9g00472 400 Gene3D - 128 191 - -
Seca9g00472 400 SMART sant 73 123 IPR001005 -
Seca9g00472 400 SMART sant 126 174 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00472 Seca-Chr9 9974479 9976432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00472 61 400 MYB Transcription Factor Family AT3G28470 48.256 5.80e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00472 Myb_DNA-binding 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00472 K09422 - gmx:100815077 559.296