Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00452 ATGAACAATATTGGCGGTTTTTCTAGCCCAACAAGCAACTCTTTTGTCCATAACATCAATAAGAATGCAATTGTTTTGTTATATTTGGCTTGTGGCTCTTTTGTTGCTTGCTTCCTTGAGGGCTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAAGCAGGTATTTAAAAGCAGTGCTTAGACAAGAAGTTGCATACTTTGATTTGCATGTCACAAGCACTTCTGAGGTCATCACCAGTGTCTCTAATGACAGCCTTGTAATTCAAGACGCTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTTATTGGGAGCTACATAGTGGCTTTTGCATTATTATGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGTTTTTCTAGTGATCCCCGGTTTTATGTATGGGAGGACTTTGATGGGGTTGGCTAAAAAGATCAGAGAAGAGTATAATCTAGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACTGTGTATTCCTTTGTGGGGGAAAGCAAGACCATAGATGCTTTCTCTGATGCTCTACAAGGGTCTGTTAAGTTGGGGCTGAAACAAGGCTTAGCTAAAGGCTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTCATGGCCTATTATGGTAGCAGAATGGTCATGTACCATGGTGCTAAAGGTGGAACTGTATTTGTAGTTGGAGCATCCCTAGCTCTTGGTGGATTAGCTCTAGGTGCTGGTTTATCCAATGTGAAGTACTTCTCAGAAGCAAGTACTGCAGGAGAACGCATAATGGAAGTGATAAAAAGAGTTCCTAAGATTGATTCTGATAATATGGCTGGGGAGGTGCTGGAGAATGTGTCAGGGGAAGTGGAATTTGACCATGTTGAATTTGTGTACCCATCAAGGCCAGACAGTGTGATCCTGAATGATTTTTGTCTAAAGATTCCAGCAGGGAAAACAGTGGCCTTGGTGGGAGGGAGTGGCTCAGGAAAATCTACTGTGATATCACTTTTGCAAAGATTTTATGACCCAATTGGGGGAGAGATATGTCTTGATGGGGTGGCTATTCATAAGTTGCAACTCAAGTGGCTGAGGTCTCAGATGGGCTTGGTTAGTCAAGAACCTGCTCTGTTTGCAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACAGAGGAAGAGGTTGTGGAAGCTGCAAAAGCTTCCAATGCTCATAATTTTATCTCACAGTTACCAGAAGGGTATGATACTCAGGTTGGGGAGAGGGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGGATTGCAATTGCACGAGCAATAATAAAAAGACCAAGAATCCTTTTGCTAGATGAAGCAACAAGTGCACTTGATTCTGAATCCGAACGAGTTGTGCAAGAAGCTTTGGACAAAGCCGCAGTGGGACGCACCACCATCATAATCGCTCACCGTTTATCCACCATCCGAAACGCAGATGTCATTGCTGTCGTTCAAAGCGGGAAGGTCATGGAAATGGGATCACACAACGACCTCATTCAAAACGACAACGGTCTCTACACTTCACTCGTCCGTCTCCAACAAACAGACAAAACCGAACAAAACGACACCATCACAACCACTACCCTCTCTCACCCTTCATCGATCTCAAATAGAGATAACAATAACAACGTTCAAAACACAAGCAGTCGTAGACTCTCCCTCGTGAGTCGTTCAAGCTCCGCAAACTCAATGGCTCGTGCTTGTGATGATGTCACTGAAGAAGCTATTACTGAAGATGATGATAAGAACCAAAACCTACCTGTTCCTTCGTTCCGAAGATTGCTTGCATTGAACTTACCGGAGTGGAAGCAAGCGTGTTTCGGGTGTTTGAATGCTGTTCTGTTTGGTGCGGTTCAGCCTGTGTATGCATTTGCGATGGGATCGGTGATATCTGTTTATTTTCTGAATGATCATGATGAGATCAAGAAGCAAATCAGGATCTATGCGCTTTGTTTTCTAGGGTTGGCTCTGTTCTCATTGGCGTTTAATATCTTCCAGCATTATTGCTTTGCTTACATGGGAGAATACTTAACTAAAAGGATTAGAGAAAGAATGCTTTCTAAGATACTCACATTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAACGTGGTAAGTAATTTTATTATTTCTCTTCATGAGGTAAGGTCTTTGGTGGGAGATAGAATGGCTCTAGTGGTGCAAACTATCTCAGCGGTGGTGATAGCATTTACTATGGGCCTGATTATTGCATGGAGGTTGGCCATTGTTATGATAGCCGTTCAGCCCATTATTATAGTGTGCTTCTACATAAGACGTGTCCTACTTAAGAGTATGTCTAACAAGGCCATCAAGGCCCAAGGTGAAAGTAGTAAGATAGCTGCTGAAGCTGTTTCCAACCTTCGAACCATCACTGCTTTTTCTTCTCAGGACAGAATCCTCAAGATGCTTGAGAAAGCCCAAGAAGGCCCAAGCCGTGAAAGCATTAGACAGTCTTGGTTTGCAGGCATTGGGCTTGCTTGTTCCCAGAGCCTCACGTTTTGTACTTGGGCTTTAGACTTTTGGTATGGTGGTAAACTTATTTTTCATGGGTATATCAGTGCTAAGGCACTGTTTGAGACTTTTATGATCTTGGTGAGCACTGGGAGGGTTATTGCTGATGCTGGTAGCATGACCAATGACCTTGCCAAAGGATCAGATGCTGTGGGCTCAGTGTTTGCAATCTTAGATAGGTACACAAAAATTGAGCCTGATGACTTAGATGGGTACAAGCCTGAAAAGATTACAGGCAAGATAGAACTCCAAGATGTCCATTTTGCATACCCAGCTAGGCCTAATGTAATGATCTTCCAAGGCTTCTCAATCAAAATTGATCCAGGCAAATCAACAGCATTGGTGGGGCAAAGTGGGTCTGGCAAATCAACAATCATAGGCTTAATAGAGAGATTTTATGATCCACTTAAAGGGACAGTGACTATAGATGGGAGAGACATAAAATCATATCACTTGAGATCACTGAGGATGCACATTGCACTTGTGAGCCAAGAGCCAACATTGTTTGCTGGGACCATAAGGGAGAACATTGCATATGGAGCATCTAGTAAGATTGATGAAACTGAGATCATAGAGGCAGCAAGGGCAGCCAATGCTCATGATTTCATAGCAAGCTTGAAAGATGGTTATGACACATGGTGTGGGGATAGAGGAGTGCAACTCTCTGGGGGTCAGAAGCAGAGGATTGCAATAGCTAGAGCTATATTGAAGAACCCTGAGGTTTTGCTGCTGGATGAAGCCACCAGTGCCCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGAAAGGGTGATGGTGGGGAGAACCAGTGTGGTGGTGGCTCATAGGTTGAGCACCATACAGAACTGTGATCTGATTGCTGTGTTGGATAAGGGAAGGGTGGTGGAGAAAGGGACCCACTCATCTTTATTGGGTAAGGGACCAAGTGGTGCTTATTACTCTCTGGTAAGTCTGCAGAGAAGACCAACCAACACCATTGCTGACTCTGCACAAGAAATCAGCTAA 3660 0.4336 MNNIGGFSSPTSNSFVHNINKNAIVLLYLACGSFVACFLEGYCWTRTGERQAARMRSRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVFLVIPGFMYGRTLMGLAKKIREEYNLAGTIAEQAISSIRTVYSFVGESKTIDAFSDALQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMAYYGSRMVMYHGAKGGTVFVVGASLALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMAGEVLENVSGEVEFDHVEFVYPSRPDSVILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEICLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAHNFISQLPEGYDTQVGERGVQMSGGQKQRIAIARAIIKRPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKVMEMGSHNDLIQNDNGLYTSLVRLQQTDKTEQNDTITTTTLSHPSSISNRDNNNNVQNTSSRRLSLVSRSSSANSMARACDDVTEEAITEDDDKNQNLPVPSFRRLLALNLPEWKQACFGCLNAVLFGAVQPVYAFAMGSVISVYFLNDHDEIKKQIRIYALCFLGLALFSLAFNIFQHYCFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAICSRLAKEANVVSNFIISLHEVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIVCFYIRRVLLKSMSNKAIKAQGESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESIRQSWFAGIGLACSQSLTFCTWALDFWYGGKLIFHGYISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDLDGYKPEKITGKIELQDVHFAYPARPNVMIFQGFSIKIDPGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYHLRSLRMHIALVSQEPTLFAGTIRENIAYGASSKIDETEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGRVVEKGTHSSLLGKGPSGAYYSLVSLQRRPTNTIADSAQEIS. 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00452 1219 SMART AAA_5 991 1184 IPR003593 GO:0016887
Seca9g00452 1219 SMART AAA_5 328 514 IPR003593 GO:0016887
Seca9g00452 1219 SUPERFAMILY ABC transporter transmembrane region 15 285 IPR036640 GO:0005524|GO:0016020
Seca9g00452 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 955 1204 IPR027417 -
Seca9g00452 1219 Gene3D - 299 569 IPR027417 -
Seca9g00452 1219 Gene3D - 962 1209 IPR027417 -
Seca9g00452 1219 PANTHER ABC TRANSPORTER B FAMILY 7 688 IPR039421 -
Seca9g00452 1219 Pfam ABC transporter transmembrane region 9 243 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00452 1219 Pfam ABC transporter transmembrane region 633 911 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00452 1219 Pfam ABC transporter 983 1132 IPR003439 GO:0005524
Seca9g00452 1219 SUPERFAMILY ABC transporter transmembrane region 613 948 IPR036640 GO:0005524|GO:0016020
Seca9g00452 1219 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 964 1201 IPR003439 GO:0005524
Seca9g00452 1219 CDD ABC_6TM_Pgp_ABCB1_D2_like 621 947 - -
Seca9g00452 1219 CDD ABC_MTABC3_MDL1_MDL2 964 1204 - -
Seca9g00452 1219 ProSitePatterns ABC transporters family signature. 1104 1118 IPR017871 GO:0005524|GO:0016887
Seca9g00452 1219 ProSitePatterns ABC transporters family signature. 440 454 IPR017871 GO:0005524|GO:0016887
Seca9g00452 1219 FunFam ABC transporter B family member 4 291 547 - -
Seca9g00452 1219 CDD ABC_MTABC3_MDL1_MDL2 301 539 - -
Seca9g00452 1219 FunFam ABC transporter B family member 4 954 1210 - -
Seca9g00452 1219 Gene3D ABC transporter type 1, transmembrane domain 25 747 IPR036640 GO:0005524|GO:0016020
Seca9g00452 1219 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 274 - -
Seca9g00452 1219 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 301 537 IPR003439 GO:0005524
Seca9g00452 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 539 IPR027417 -
Seca9g00452 1219 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 638 929 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00452 1219 Gene3D ABC transporter type 1, transmembrane domain 750 961 IPR036640 GO:0005524|GO:0016020
Seca9g00452 1219 Pfam ABC transporter 319 468 IPR003439 GO:0005524
Seca9g00452 1219 FunFam Putative ABC transporter B family member 8 597 952 - -
Seca9g00452 1219 MobiDBLite consensus disorder prediction 544 587 - -
Seca9g00452 1219 FunFam ABC transporter B family member 1 1 300 - -
Seca9g00452 1219 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 266 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00452 Seca-Chr9 9645273 9653595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00452 634 1219 Calmodulin-binding Proteins AT2G36910 37.925 1.75e-118 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00452 K05658 - gmx:100807709 1984.15