Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00450 ATGAAGAGGGCAAGGGATGATGTTTACTCTGGCTCTGCTTCTCAATTCAAACGCCCCTTTGCTTCTTCGCGTGGTGATTCGTATGTCCCTGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGTGGTGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAGAGAAAAATATGACATGTTCCTTGAAGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCATAATAATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGCCCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATTAGTTTTGTAAACAAGATAAAGAAACGATTCCAAAATGATGAACATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACATCTGCAGCGCCTTCTGCACAGCATGCTCCATATGGTCGAAATTCATTGCAGCGCTTCAATGAGCGGAGTTCTGTGACACCCATGATGCGGCAAATGCATGTGGACAAGCAACGTTATCGACGAGACAGACTTCCTTCTCATGATCGTGATCGCGATCATAGTGTTGAACACCCTGAGCTTGATGATGACAAATCAATGATGAACATGCATAAGGAGCAGAGGAAACGTGAGAGTAGGGATAGAAGAATTCGTGATCAGGATGAGAGAGAACCTGATCTTGATAACAGCAGGGATTTGAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTAAAGAAGGCTGAAGGTTATGGGTTGGCTTCTGACCTTGCTTCTTATGATGACAAAGATAACTTAAAGAGCATGTACAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAACATTCTTGAAGTGTCTTCATATTTTCAGCAATGGAATAATAAAAAGAAATGATTTACAAAATTTGGTAACTGATTTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATCGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGGTCATTTATCAAGATCATCGAAGTTGGAGGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAACTAAAGAGAAGGATAGACACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCAAGCTACCGGCTTCTCCCTCCAGATTATCCAATTCCTATAGCCAGTCAACGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCCGTGACTTCAGGAAGTGAGGACTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTGGAGTCTGTGAGTTCAGCTGCTAAACGTGCAGAAGAATTGTATAACAACATTAATGAAAATAAGATCAGTCCAGAGAGTCTGAACCGTCTTGAAGATCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTTTACGGCGACCATGGTCTTGACGTTATAGACATACTGCGTAAAAACCCAACTCATTCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAGTAAATGTCGTTCAGATTTCAATAAAGTTTGGGCTGAGATTTATTTTAAAAATCACTACAAATCACTTGACCACCGTAGTTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTCTTCAGTCTATTGCCGCCGGAAATAAACAGCCTTTAATTCCACATCTGGAATTTGAATATTCTGATGCAGGGATTCATGAAGACCTGTATAAACTTGTTCAGTATTCATGTGAGGAGGTATTCTCAAGTAAAGAATTATTAAATAAAATTATGAGGCTCTGGAGTACATTCTTGGAGCCGATGCTTGGTGTTACCTCCCAATCTCATGCAACAGAGAGGGTAGAGGACAGGAAGGCAGGGCATAATGTTAGCAATTTTGTTGCACCAAATGTAGGAGGTGATGGAAGCCCTCATGGAGATTCTATTTCAATAAATTCAAGGTTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACCGGACTAGTGTAGCAACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACTTGGTTGTAGAGATGATCTGTTAATGGATAAAGGGCAGAAAAATATTGAATGCAGTGATAAAGCCTCTGGGTTTAGTAAACAATTTTCCTCTGATGAACAAGGAGTTAAAAACAATGCTTCTATTACTATTAGAGGAGAAAACAGCCTGAACAGGACCAACGGTTGTATCCTTACTCCATCCCGACCTACTGATACTGATGACTCTGTAGCTAAGTCCCAGAGTGTTAATGTACCTTTGATTGAGGGATGTGACATCGCAGCTCCAGTACCAGTGGCCAATGGGGTGCTAGTTGAGAACAGTAAAGTAAAAAGCCATGAAGAATCTTCTGGGCCTTGCAAAATTGAAAAAGAAGAGGGTGAATTATCACCAAATGGTGACTCTGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGCGCAGTCAATGACCAAGTCAAAGCACAATATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGCTGTCCAGAGGCTGCTGGTGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCGGGTGAAGATGTCTCAGGCAGTGAGTCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAGGAGGAGGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCACAAGCCGGAGGAGATGGCTCATCTTTGCCGTTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTAACAAAGCACGTATCAGCAGTTTCATGTGTTGAAGAAACGAAGGATTCAAGGGTGTTTTATGGAAATGATGATTTCTATGTGCTATTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGATTGCTGAAATGAAACGGAAAGCAAAAGATGGTAGTTCCTCAGATCATTATTCAAGATTTATGAATGCACTGTACAACTTGCTTGATGGATCTGCCGAGAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCTTATGTGTTATTCACATTGGACAAGTTAATATATAAATTGATCAGACAGCTTCAAACTGTTGCAACCGATGAGGTAGACGGCAAGCTTATCCAATTATATGAGTATGAGAAGTCTCGGAAATCTGGGAAATTAAATGATTCAGTATATCATGCAAATGCACATGTCATCCTTCATGAGGAGAATATATATCGTTTGCAATGTTCCTCTACCCCCTGTCGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCTGTTTCCATTGATCCGAATTTTTCCTTTTATCTGCACAACGATTTTCTGTCTGTCTTTCCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAACGTAAATATGGAGACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTACTGTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCCTATGTTCTTGACACACAAGACTTCTTCTTCCGTCCAAGAAAGAGAAGACGAACATCATCAATGATCACATCTTCGCGATCTCGTAGGGACAGAGAAGAAAGATTCCGGAGATTGTTGCCATCCTCGTGA 4161 0.4059 MKRARDDVYSGSASQFKRPFASSRGDSYVPGGGGGGGGGGGGGGGGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSAQHAPYGRNSLQRFNERSSVTPMMRQMHVDKQRYRRDRLPSHDRDRDHSVEHPELDDDKSMMNMHKEQRKRESRDRRIRDQDEREPDLDNSRDLNSQRFPDKKKSVKKAEGYGLASDLASYDDKDNLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDGHLSRSSKLEDKDKEQKREMDGTKEKDRHKEKYMGKSIQELDLSDCKRCTPSYRLLPPDYPIPIASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNINENKISPESLNRLEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHSLPVILTRLKQKQEEWSKCRSDFNKVWAEIYFKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLEFEYSDAGIHEDLYKLVQYSCEEVFSSKELLNKIMRLWSTFLEPMLGVTSQSHATERVEDRKAGHNVSNFVAPNVGGDGSPHGDSISINSRLPKSDKNEVDGRVTEVKNVHRTSVATNDKENGSVGGELGCRDDLLMDKGQKNIECSDKASGFSKQFSSDEQGVKNNASITIRGENSLNRTNGCILTPSRPTDTDDSVAKSQSVNVPLIEGCDIAAPVPVANGVLVENSKVKSHEESSGPCKIEKEEGELSPNGDSEEDNFVAYGDSNAQSMTKSKHNIERRKYQSRNGEDECCPEAAGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEDIEHDDVDGKAESEGEAEGMCDAQAGGDGSSLPLSERFLSSVKPLTKHVSAVSCVEETKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMIAEMKRKAKDGSSSDHYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLIRQLQTVATDEVDGKLIQLYEYEKSRKSGKLNDSVYHANAHVILHEENIYRLQCSSTPCRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILQRNKRKYGDLDELSAICSAMEGVTVINGLECKIACSSSKISYVLDTQDFFFRPRKRRRTSSMITSSRSRRDREERFRRLLPSS. 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00450 1386 MobiDBLite consensus disorder prediction 764 804 - -
Seca9g00450 1386 Pfam C-terminal domain of Sin3a protein 1106 1353 IPR031693 -
Seca9g00450 1386 Gene3D Paired amphipathic helix 140 212 IPR036600 GO:0006355
Seca9g00450 1386 Pfam Sin3 family co-repressor 478 570 IPR013194 -
Seca9g00450 1386 ProSiteProfiles PAH domain profile. 141 211 IPR003822 GO:0006355
Seca9g00450 1386 MobiDBLite consensus disorder prediction 999 1019 - -
Seca9g00450 1386 PANTHER SIN3B-RELATED 57 1247 IPR039774 GO:0003714
Seca9g00450 1386 MobiDBLite consensus disorder prediction 1367 1386 - -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 934 954 - -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 429 460 - -
Seca9g00450 1386 ProSiteProfiles PAH domain profile. 57 127 IPR003822 GO:0006355
Seca9g00450 1386 MobiDBLite consensus disorder prediction 435 460 - -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 212 322 - -
Seca9g00450 1386 SMART hdac_interact2seq4b 476 576 IPR013194 -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 218 238 - -
Seca9g00450 1386 SUPERFAMILY PAH2 domain 138 210 IPR036600 GO:0006355
Seca9g00450 1386 MobiDBLite consensus disorder prediction 1035 1049 - -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 934 1071 - -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 1363 1386 - -
Seca9g00450 1386 FunFam Paired amphipathic helix protein SIN3 340 414 - -
Seca9g00450 1386 Pfam Paired amphipathic helix repeat 80 124 IPR003822 GO:0006355
Seca9g00450 1386 Pfam Paired amphipathic helix repeat 365 409 IPR003822 GO:0006355
Seca9g00450 1386 Pfam Paired amphipathic helix repeat 164 208 IPR003822 GO:0006355
Seca9g00450 1386 MobiDBLite consensus disorder prediction 883 903 - -
Seca9g00450 1386 FunFam Paired amphipathic helix protein Sin3 63 125 - -
Seca9g00450 1386 FunFam Paired amphipathic helix SIN3-like protein 140 211 - -
Seca9g00450 1386 Coils Coil 549 569 - -
Seca9g00450 1386 Gene3D Paired amphipathic helix 63 125 IPR036600 GO:0006355
Seca9g00450 1386 Gene3D Paired amphipathic helix 341 414 IPR036600 GO:0006355
Seca9g00450 1386 ProSiteProfiles PAH domain profile. 343 412 IPR003822 GO:0006355
Seca9g00450 1386 MobiDBLite consensus disorder prediction 244 322 - -
Seca9g00450 1386 SUPERFAMILY PAH2 domain 55 126 IPR036600 GO:0006355
Seca9g00450 1386 SUPERFAMILY PAH2 domain 346 412 IPR036600 GO:0006355
Seca9g00450 1386 MobiDBLite consensus disorder prediction 1 55 - -
Seca9g00450 1386 MobiDBLite consensus disorder prediction 979 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00450 Seca-Chr9 9591950 9612679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00450 45 160 WRKY Transcription Factor Family AT4G12020 50.427 2.79e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca9g00450 Sin3a_C 1.4e-54 No_clan