Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00423 ATGTCATCATACTACCCACTTTATGCCCCACCATCACATCTTAGGTTCACAGAGACATCACGAGCAAGAATAGAAAAGGCTAGTGGGGAATGCTTGACATTTGATCAGCTTGCACTTAGGGCTCCTTTGGGACAGAACACGGTATGA 147 0.4558 MSSYYPLYAPPSHLRFTETSRARIEKASGECLTFDQLALRAPLGQNTV. 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00423 48 PANTHER 60S RIBOSOMAL PROTEIN L18 13 48 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca9g00423 48 Pfam Ribosomal protein 60S L18 and 50S L18e 14 48 IPR021131 -
Seca9g00423 48 Gene3D - 11 48 - -
Seca9g00423 48 SUPERFAMILY Ribosomal proteins L15p and L18e 14 47 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00423 Seca-Chr9 9120640 9120786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00423 14 48 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 91.429 2.87e-18 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00423 K02883 - sind:105166418 68.9366