Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00414 ATGGCATCAGGGGGTACAGAAGCTTTCCCAGATCTGGGTAAACACTGCCAACACCGCGATTGCAACCAGCTCGATTTCCTTCCTTTCACCTGCGACGGTTGCAAACAGGTATTCTGTTTGGATCACAGATCATACAAATCCCACGCGTGCCCGAAATCCGACCACAACAGCAGGAAAGTTGTTGTCTGCGAAGCATGTTCCATGTCCATTGAGATCACCGGCCACGTGGGACAAGACGAGGAGGCAATCTTGGAGAGGCACCACAAGTCTGGGAAGTGTGATCCCAACAAGAAGAAGAAACCCATTTGCCCTGTGAAGCGATGCAAGGAAGTTTTGACTTTTTCTAATACCAGTACTTGTAAAACCTGCCACATGAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGACCATGCTTGTAGCAGAGGAGCTTCAGCTTCCTCTTCCTCATCTTCTGGTAATGGACGGTGGAATAATAGATTCTTGGCTGCTCTAGCTTCAAGGAATGGACAAGACTGTTCCAAGAGTGCTGGATCTCGTTCTACTTCAACTTCTAGTACTCCTTCTGTTAAAGCTTGTTGA 579 0.4836 MASGGTEAFPDLGKHCQHRDCNQLDFLPFTCDGCKQVFCLDHRSYKSHACPKSDHNSRKVVVCEACSMSIEITGHVGQDEEAILERHHKSGKCDPNKKKKPICPVKRCKEVLTFSNTSTCKTCHMKVCLKHRFPADHACSRGASASSSSSSGNGRWNNRFLAALASRNGQDCSKSAGSRSTSTSSTPSVKAC. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00414 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Seca9g00414 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 188 - -
Seca9g00414 192 SUPERFAMILY AN1-like Zinc finger 95 142 IPR035896 -
Seca9g00414 192 FunFam AN1-type zinc finger protein 2B isoform X1 6 67 - -
Seca9g00414 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Seca9g00414 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Seca9g00414 192 Gene3D - 78 155 IPR035896 -
Seca9g00414 192 MobiDBLite consensus disorder prediction 169 192 - -
Seca9g00414 192 SUPERFAMILY AN1-like Zinc finger 6 53 IPR035896 -
Seca9g00414 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Seca9g00414 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Seca9g00414 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Seca9g00414 192 Gene3D - 2 68 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00414 Seca-Chr9 8954138 8955701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00414 1 172 C2H2 Transcription Factor Family AT3G28210 63.953 2.04e-80 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00414 - - aprc:113867149 341.273